miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3637 5' -54.3 NC_001650.1 + 36907 0.66 0.95903
Target:  5'- -cGUCCGCGUgCCugUCcacuGGCAGGa -3'
miRNA:   3'- guUAGGCGCGaGGugAGcu--UCGUCUa -5'
3637 5' -54.3 NC_001650.1 + 133688 0.66 0.95903
Target:  5'- ---cCCGCGCuUUCGCUCucguccgaGAAGCGGGg -3'
miRNA:   3'- guuaGGCGCG-AGGUGAG--------CUUCGUCUa -5'
3637 5' -54.3 NC_001650.1 + 127604 0.66 0.95903
Target:  5'- aGGUCCGgGCUCUcgggGCUCcuGGCGGGc -3'
miRNA:   3'- gUUAGGCgCGAGG----UGAGcuUCGUCUa -5'
3637 5' -54.3 NC_001650.1 + 51508 0.66 0.945154
Target:  5'- --cUCCGCGUgcccgcccuugggCCACUCGcAGCAGc- -3'
miRNA:   3'- guuAGGCGCGa------------GGUGAGCuUCGUCua -5'
3637 5' -54.3 NC_001650.1 + 156583 0.67 0.942421
Target:  5'- cCAggCCGaCGC-CCAgCUCGgcGCAGAa -3'
miRNA:   3'- -GUuaGGC-GCGaGGU-GAGCuuCGUCUa -5'
3637 5' -54.3 NC_001650.1 + 121539 0.67 0.937671
Target:  5'- aGGUCCuGCGgaCCGCccaagUGGAGCAGAa -3'
miRNA:   3'- gUUAGG-CGCgaGGUGa----GCUUCGUCUa -5'
3637 5' -54.3 NC_001650.1 + 164824 0.67 0.927441
Target:  5'- ---gCgGCGUUCCGCUCGGGcugcagccuGCGGAUg -3'
miRNA:   3'- guuaGgCGCGAGGUGAGCUU---------CGUCUA- -5'
3637 5' -54.3 NC_001650.1 + 133161 0.68 0.910262
Target:  5'- aAGUaCCGCccacGCUCCGC-CGGAGaCAGAUa -3'
miRNA:   3'- gUUA-GGCG----CGAGGUGaGCUUC-GUCUA- -5'
3637 5' -54.3 NC_001650.1 + 79098 0.7 0.820863
Target:  5'- --cUCCGgGCgcggCCGCUCGGcgGGCGGGa -3'
miRNA:   3'- guuAGGCgCGa---GGUGAGCU--UCGUCUa -5'
3637 5' -54.3 NC_001650.1 + 26669 0.71 0.784852
Target:  5'- -cGUCCGCGUaCCACagGGAGguGAUa -3'
miRNA:   3'- guUAGGCGCGaGGUGagCUUCguCUA- -5'
3637 5' -54.3 NC_001650.1 + 89470 0.72 0.736752
Target:  5'- gGGUCCuGCGCUgggCCGC-CGAGGCGGGg -3'
miRNA:   3'- gUUAGG-CGCGA---GGUGaGCUUCGUCUa -5'
3637 5' -54.3 NC_001650.1 + 42139 1.05 0.007476
Target:  5'- aCAAUCCGCGCUCCACUCGAAGCAGAUc -3'
miRNA:   3'- -GUUAGGCGCGAGGUGAGCUUCGUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.