miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3638 5' -51.1 NC_001650.1 + 36190 0.66 0.993129
Target:  5'- aACUUugACUUCCCCUACGuGAuagaCAGGg -3'
miRNA:   3'- cUGAG--UGAAGGGGAUGC-CUuga-GUUC- -5'
3638 5' -51.1 NC_001650.1 + 57095 0.67 0.990949
Target:  5'- aGACUCccccucCUUCCCUUGCaGGGuUUCAGGa -3'
miRNA:   3'- -CUGAGu-----GAAGGGGAUG-CCUuGAGUUC- -5'
3638 5' -51.1 NC_001650.1 + 46333 0.67 0.988257
Target:  5'- uGCUCGC-UCCCCaUugGccGCUCGAGc -3'
miRNA:   3'- cUGAGUGaAGGGG-AugCcuUGAGUUC- -5'
3638 5' -51.1 NC_001650.1 + 61162 0.67 0.986696
Target:  5'- aGAggCGCguguUCCCCaa-GGAGCUCAAGg -3'
miRNA:   3'- -CUgaGUGa---AGGGGaugCCUUGAGUUC- -5'
3638 5' -51.1 NC_001650.1 + 91483 0.68 0.981053
Target:  5'- uGACUCACcUCCCUaaaggGCGGGACg---- -3'
miRNA:   3'- -CUGAGUGaAGGGGa----UGCCUUGaguuc -5'
3638 5' -51.1 NC_001650.1 + 63745 0.68 0.981053
Target:  5'- -cCUgACUUUgUUUAUGGAGCUCAAGa -3'
miRNA:   3'- cuGAgUGAAGgGGAUGCCUUGAGUUC- -5'
3638 5' -51.1 NC_001650.1 + 40592 0.68 0.981053
Target:  5'- uGACUCGCccucgcgCCCCccucguggguguUugGGAACUCGGa -3'
miRNA:   3'- -CUGAGUGaa-----GGGG------------AugCCUUGAGUUc -5'
3638 5' -51.1 NC_001650.1 + 60632 0.68 0.978822
Target:  5'- aGCUCAa---CCUgaggACGGGGCUCAAGg -3'
miRNA:   3'- cUGAGUgaagGGGa---UGCCUUGAGUUC- -5'
3638 5' -51.1 NC_001650.1 + 38078 0.68 0.976403
Target:  5'- -cCUCAgCUUCCCCUugGgGGACUgCAc- -3'
miRNA:   3'- cuGAGU-GAAGGGGAugC-CUUGA-GUuc -5'
3638 5' -51.1 NC_001650.1 + 154813 0.7 0.944966
Target:  5'- uGCaagCGCUUCCCCcGCGGGGCUUu-- -3'
miRNA:   3'- cUGa--GUGAAGGGGaUGCCUUGAGuuc -5'
3638 5' -51.1 NC_001650.1 + 141352 0.7 0.944966
Target:  5'- -cCUCGCUUCCUCUacGCGGAaguaGCgCGAGg -3'
miRNA:   3'- cuGAGUGAAGGGGA--UGCCU----UGaGUUC- -5'
3638 5' -51.1 NC_001650.1 + 26567 0.72 0.887116
Target:  5'- -uCUCGCUgCCCCUGCucucGGGGCUCAc- -3'
miRNA:   3'- cuGAGUGAaGGGGAUG----CCUUGAGUuc -5'
3638 5' -51.1 NC_001650.1 + 49222 0.76 0.719188
Target:  5'- uGCUCACc-CCCCUGCGGGcGCUCGAc -3'
miRNA:   3'- cUGAGUGaaGGGGAUGCCU-UGAGUUc -5'
3638 5' -51.1 NC_001650.1 + 19687 0.77 0.657214
Target:  5'- uGAC-CugUUCCCUcaauUACGGGGCUCAGGu -3'
miRNA:   3'- -CUGaGugAAGGGG----AUGCCUUGAGUUC- -5'
3638 5' -51.1 NC_001650.1 + 42285 1.09 0.010883
Target:  5'- aGACUCACUUCCCCUACGGAACUCAAGc -3'
miRNA:   3'- -CUGAGUGAAGGGGAUGCCUUGAGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.