Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3639 | 3' | -55.7 | NC_001650.1 | + | 42651 | 1.09 | 0.00364 |
Target: 5'- gGGUAGAGUUCGCUGCAGAGCCAGGGUu -3' miRNA: 3'- -CCAUCUCAAGCGACGUCUCGGUCCCA- -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 46918 | 0.71 | 0.677253 |
Target: 5'- gGGgggGGGGUUCGCgaucgcggugGCAGuAGCCuGGGg -3' miRNA: 3'- -CCa--UCUCAAGCGa---------CGUC-UCGGuCCCa -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 35649 | 0.7 | 0.765725 |
Target: 5'- aGGUguaccgGGuGUUCGC-GUcGAGCCAGGGg -3' miRNA: 3'- -CCA------UCuCAAGCGaCGuCUCGGUCCCa -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 89491 | 0.7 | 0.765725 |
Target: 5'- aGGcGGGGUUCGCguggGCcgccaucgacaAGAGCCGGGuGUu -3' miRNA: 3'- -CCaUCUCAAGCGa---CG-----------UCUCGGUCC-CA- -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 31988 | 0.7 | 0.784323 |
Target: 5'- --cGGAGUcCGCcucUGguGAGCUAGGGg -3' miRNA: 3'- ccaUCUCAaGCG---ACguCUCGGUCCCa -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 81770 | 0.69 | 0.81118 |
Target: 5'- uGGUGGAGUUCGCcuccgccgUGCAGAcGCagAGGa- -3' miRNA: 3'- -CCAUCUCAAGCG--------ACGUCU-CGg-UCCca -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 13060 | 0.69 | 0.802378 |
Target: 5'- gGGuUAGGGUUaaaGCUGgagcuaggguUAGAGCUAGGGUu -3' miRNA: 3'- -CC-AUCUCAAg--CGAC----------GUCUCGGUCCCA- -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 180054 | 0.69 | 0.793423 |
Target: 5'- gGGcUAGGGUUagGCUGCAGguaaAGUUAGGGUu -3' miRNA: 3'- -CC-AUCUCAAg-CGACGUC----UCGGUCCCA- -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 13347 | 0.69 | 0.793423 |
Target: 5'- gGGcUAGGGUUagGCUGCAGguaaAGUUAGGGUu -3' miRNA: 3'- -CC-AUCUCAAg-CGACGUC----UCGGUCCCA- -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 179899 | 0.69 | 0.802378 |
Target: 5'- gGGuUAGGGUUaaaGCUGgagcuaggguUAGAGCUAGGGUu -3' miRNA: 3'- -CC-AUCUCAAg--CGAC----------GUCUCGGUCCCA- -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 13192 | 0.69 | 0.802378 |
Target: 5'- gGGuUAGGGUUaaaGCUGgagcuaggguUAGAGCUAGGGUu -3' miRNA: 3'- -CC-AUCUCAAg--CGAC----------GUCUCGGUCCCA- -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 179767 | 0.69 | 0.802378 |
Target: 5'- gGGuUAGGGUUaaaGCUGgagcuaggguUAGAGCUAGGGUu -3' miRNA: 3'- -CC-AUCUCAAg--CGAC----------GUCUCGGUCCCA- -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 62849 | 0.68 | 0.857275 |
Target: 5'- cGG-GGAGaagcauaagcaGCaGCAGAGCCAGGGg -3' miRNA: 3'- -CCaUCUCaag--------CGaCGUCUCGGUCCCa -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 98422 | 0.68 | 0.867855 |
Target: 5'- cGGac-AGUUgaCGCUGCAGGGgCGGGGg -3' miRNA: 3'- -CCaucUCAA--GCGACGUCUCgGUCCCa -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 77025 | 0.68 | 0.867855 |
Target: 5'- gGGUGGGGUUCagGCcGCGcuGGGCCucGGGGg -3' miRNA: 3'- -CCAUCUCAAG--CGaCGU--CUCGG--UCCCa -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 111105 | 0.68 | 0.875161 |
Target: 5'- aGGgcGGcggUCGCgacgcgggGCAGGGUCAGGGg -3' miRNA: 3'- -CCauCUca-AGCGa-------CGUCUCGGUCCCa -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 179947 | 0.68 | 0.875161 |
Target: 5'- gGGuUAGGGUUaaaGCUGgagcuaggguUAGGGCUAGGGUu -3' miRNA: 3'- -CC-AUCUCAAg--CGAC----------GUCUCGGUCCCA- -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 22156 | 0.68 | 0.860339 |
Target: 5'- aGGUAGccGGgggUC-CUGCAGAaggagGCCGGGGa -3' miRNA: 3'- -CCAUC--UCa--AGcGACGUCU-----CGGUCCCa -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 179815 | 0.68 | 0.875161 |
Target: 5'- gGGuUAGGGUUaaaGCUGgagcuaggguUAGGGCUAGGGUu -3' miRNA: 3'- -CC-AUCUCAAg--CGAC----------GUCUCGGUCCCA- -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 13240 | 0.68 | 0.875161 |
Target: 5'- gGGuUAGGGUUaaaGCUGgagcuaggguUAGGGCUAGGGUu -3' miRNA: 3'- -CC-AUCUCAAg--CGAC----------GUCUCGGUCCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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