Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3639 | 3' | -55.7 | NC_001650.1 | + | 1786 | 0.67 | 0.902184 |
Target: 5'- aGGUAGGcagUUGCcagGCAGGGUCuGGGGUg -3' miRNA: 3'- -CCAUCUca-AGCGa--CGUCUCGG-UCCCA- -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 13021 | 0.66 | 0.935766 |
Target: 5'- -uUAGGGUUaaaGCUGgagcuaggguUAGGGCUAGGGUu -3' miRNA: 3'- ccAUCUCAAg--CGAC----------GUCUCGGUCCCA- -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 13060 | 0.69 | 0.802378 |
Target: 5'- gGGuUAGGGUUaaaGCUGgagcuaggguUAGAGCUAGGGUu -3' miRNA: 3'- -CC-AUCUCAAg--CGAC----------GUCUCGGUCCCA- -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 13108 | 0.68 | 0.875161 |
Target: 5'- gGGuUAGGGUUaaaGCUGgagcuaggguUAGGGCUAGGGUu -3' miRNA: 3'- -CC-AUCUCAAg--CGAC----------GUCUCGGUCCCA- -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 13153 | 0.66 | 0.935766 |
Target: 5'- -uUAGGGUUaaaGCUGgagcuaggguUAGGGCUAGGGUu -3' miRNA: 3'- ccAUCUCAAg--CGAC----------GUCUCGGUCCCA- -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 13192 | 0.69 | 0.802378 |
Target: 5'- gGGuUAGGGUUaaaGCUGgagcuaggguUAGAGCUAGGGUu -3' miRNA: 3'- -CC-AUCUCAAg--CGAC----------GUCUCGGUCCCA- -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 13240 | 0.68 | 0.875161 |
Target: 5'- gGGuUAGGGUUaaaGCUGgagcuaggguUAGGGCUAGGGUu -3' miRNA: 3'- -CC-AUCUCAAg--CGAC----------GUCUCGGUCCCA- -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 13347 | 0.69 | 0.793423 |
Target: 5'- gGGcUAGGGUUagGCUGCAGguaaAGUUAGGGUu -3' miRNA: 3'- -CC-AUCUCAAg-CGACGUC----UCGGUCCCA- -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 22156 | 0.68 | 0.860339 |
Target: 5'- aGGUAGccGGgggUC-CUGCAGAaggagGCCGGGGa -3' miRNA: 3'- -CCAUC--UCa--AGcGACGUCU-----CGGUCCCa -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 24909 | 0.66 | 0.925518 |
Target: 5'- --cGGGGUUCcuGCUGUGGA-CCAGGGc -3' miRNA: 3'- ccaUCUCAAG--CGACGUCUcGGUCCCa -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 26786 | 0.66 | 0.935766 |
Target: 5'- --cGGAGUUUGaggaGCGG-GCCGGGGg -3' miRNA: 3'- ccaUCUCAAGCga--CGUCuCGGUCCCa -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 29696 | 0.67 | 0.889121 |
Target: 5'- aGGUGGAGgaCGC-GgAGuGCCuGGGUc -3' miRNA: 3'- -CCAUCUCaaGCGaCgUCuCGGuCCCA- -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 31988 | 0.7 | 0.784323 |
Target: 5'- --cGGAGUcCGCcucUGguGAGCUAGGGg -3' miRNA: 3'- ccaUCUCAaGCG---ACguCUCGGUCCCa -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 35649 | 0.7 | 0.765725 |
Target: 5'- aGGUguaccgGGuGUUCGC-GUcGAGCCAGGGg -3' miRNA: 3'- -CCA------UCuCAAGCGaCGuCUCGGUCCCa -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 42651 | 1.09 | 0.00364 |
Target: 5'- gGGUAGAGUUCGCUGCAGAGCCAGGGUu -3' miRNA: 3'- -CCAUCUCAAGCGACGUCUCGGUCCCA- -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 46918 | 0.71 | 0.677253 |
Target: 5'- gGGgggGGGGUUCGCgaucgcggugGCAGuAGCCuGGGg -3' miRNA: 3'- -CCa--UCUCAAGCGa---------CGUC-UCGGuCCCa -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 50559 | 0.66 | 0.914322 |
Target: 5'- cGGUGGAGUgccCGC-GCAacccGGUCAGGGc -3' miRNA: 3'- -CCAUCUCAa--GCGaCGUc---UCGGUCCCa -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 62849 | 0.68 | 0.857275 |
Target: 5'- cGG-GGAGaagcauaagcaGCaGCAGAGCCAGGGg -3' miRNA: 3'- -CCaUCUCaag--------CGaCGUCUCGGUCCCa -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 63576 | 0.67 | 0.90837 |
Target: 5'- cGGUGaAGUUgGCcGCgAGGGCCAGGa- -3' miRNA: 3'- -CCAUcUCAAgCGaCG-UCUCGGUCCca -5' |
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3639 | 3' | -55.7 | NC_001650.1 | + | 68905 | 0.66 | 0.925518 |
Target: 5'- --gAGGGggCGCU-CuuuGAGCCGGGGg -3' miRNA: 3'- ccaUCUCaaGCGAcGu--CUCGGUCCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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