miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3639 3' -55.7 NC_001650.1 + 46918 0.71 0.677253
Target:  5'- gGGgggGGGGUUCGCgaucgcggugGCAGuAGCCuGGGg -3'
miRNA:   3'- -CCa--UCUCAAGCGa---------CGUC-UCGGuCCCa -5'
3639 3' -55.7 NC_001650.1 + 142748 0.66 0.940535
Target:  5'- --cGGAGUUUGCggagGCGGucuCCAGGGc -3'
miRNA:   3'- ccaUCUCAAGCGa---CGUCuc-GGUCCCa -5'
3639 3' -55.7 NC_001650.1 + 26786 0.66 0.935766
Target:  5'- --cGGAGUUUGaggaGCGG-GCCGGGGg -3'
miRNA:   3'- ccaUCUCAAGCga--CGUCuCGGUCCCa -5'
3639 3' -55.7 NC_001650.1 + 143548 0.66 0.930761
Target:  5'- gGGUccgAGAGacaCGCUGUgguagGGGGCgAGGGUg -3'
miRNA:   3'- -CCA---UCUCaa-GCGACG-----UCUCGgUCCCA- -5'
3639 3' -55.7 NC_001650.1 + 79673 0.66 0.925518
Target:  5'- aGGUgGGAGagaGCUGCGccuGGGUCAGGGc -3'
miRNA:   3'- -CCA-UCUCaagCGACGU---CUCGGUCCCa -5'
3639 3' -55.7 NC_001650.1 + 50559 0.66 0.914322
Target:  5'- cGGUGGAGUgccCGC-GCAacccGGUCAGGGc -3'
miRNA:   3'- -CCAUCUCAa--GCGaCGUc---UCGGUCCCa -5'
3639 3' -55.7 NC_001650.1 + 106842 0.67 0.895767
Target:  5'- cGGUgcaGGGGUgggCGCUGgGGucgGGCcCGGGGUg -3'
miRNA:   3'- -CCA---UCUCAa--GCGACgUC---UCG-GUCCCA- -5'
3639 3' -55.7 NC_001650.1 + 29696 0.67 0.889121
Target:  5'- aGGUGGAGgaCGC-GgAGuGCCuGGGUc -3'
miRNA:   3'- -CCAUCUCaaGCGaCgUCuCGGuCCCA- -5'
3639 3' -55.7 NC_001650.1 + 98570 0.67 0.882251
Target:  5'- --cAGAGUU---UGCGGGGUCAGGGUg -3'
miRNA:   3'- ccaUCUCAAgcgACGUCUCGGUCCCA- -5'
3639 3' -55.7 NC_001650.1 + 111105 0.68 0.875161
Target:  5'- aGGgcGGcggUCGCgacgcgggGCAGGGUCAGGGg -3'
miRNA:   3'- -CCauCUca-AGCGa-------CGUCUCGGUCCCa -5'
3639 3' -55.7 NC_001650.1 + 35649 0.7 0.765725
Target:  5'- aGGUguaccgGGuGUUCGC-GUcGAGCCAGGGg -3'
miRNA:   3'- -CCA------UCuCAAGCGaCGuCUCGGUCCCa -5'
3639 3' -55.7 NC_001650.1 + 89491 0.7 0.765725
Target:  5'- aGGcGGGGUUCGCguggGCcgccaucgacaAGAGCCGGGuGUu -3'
miRNA:   3'- -CCaUCUCAAGCGa---CG-----------UCUCGGUCC-CA- -5'
3639 3' -55.7 NC_001650.1 + 31988 0.7 0.784323
Target:  5'- --cGGAGUcCGCcucUGguGAGCUAGGGg -3'
miRNA:   3'- ccaUCUCAaGCG---ACguCUCGGUCCCa -5'
3639 3' -55.7 NC_001650.1 + 62849 0.68 0.857275
Target:  5'- cGG-GGAGaagcauaagcaGCaGCAGAGCCAGGGg -3'
miRNA:   3'- -CCaUCUCaag--------CGaCGUCUCGGUCCCa -5'
3639 3' -55.7 NC_001650.1 + 98422 0.68 0.867855
Target:  5'- cGGac-AGUUgaCGCUGCAGGGgCGGGGg -3'
miRNA:   3'- -CCaucUCAA--GCGACGUCUCgGUCCCa -5'
3639 3' -55.7 NC_001650.1 + 77025 0.68 0.867855
Target:  5'- gGGUGGGGUUCagGCcGCGcuGGGCCucGGGGg -3'
miRNA:   3'- -CCAUCUCAAG--CGaCGU--CUCGG--UCCCa -5'
3639 3' -55.7 NC_001650.1 + 13021 0.66 0.935766
Target:  5'- -uUAGGGUUaaaGCUGgagcuaggguUAGGGCUAGGGUu -3'
miRNA:   3'- ccAUCUCAAg--CGAC----------GUCUCGGUCCCA- -5'
3639 3' -55.7 NC_001650.1 + 180054 0.69 0.793423
Target:  5'- gGGcUAGGGUUagGCUGCAGguaaAGUUAGGGUu -3'
miRNA:   3'- -CC-AUCUCAAg-CGACGUC----UCGGUCCCA- -5'
3639 3' -55.7 NC_001650.1 + 13347 0.69 0.793423
Target:  5'- gGGcUAGGGUUagGCUGCAGguaaAGUUAGGGUu -3'
miRNA:   3'- -CC-AUCUCAAg-CGACGUC----UCGGUCCCA- -5'
3639 3' -55.7 NC_001650.1 + 179899 0.69 0.802378
Target:  5'- gGGuUAGGGUUaaaGCUGgagcuaggguUAGAGCUAGGGUu -3'
miRNA:   3'- -CC-AUCUCAAg--CGAC----------GUCUCGGUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.