miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3639 3' -55.7 NC_001650.1 + 103968 0.66 0.925518
Target:  5'- -cUGGGGUgUCGCaGUAGAaggaugGCCAGGGa -3'
miRNA:   3'- ccAUCUCA-AGCGaCGUCU------CGGUCCCa -5'
3639 3' -55.7 NC_001650.1 + 68905 0.66 0.925518
Target:  5'- --gAGGGggCGCU-CuuuGAGCCGGGGg -3'
miRNA:   3'- ccaUCUCaaGCGAcGu--CUCGGUCCCa -5'
3639 3' -55.7 NC_001650.1 + 24909 0.66 0.925518
Target:  5'- --cGGGGUUCcuGCUGUGGA-CCAGGGc -3'
miRNA:   3'- ccaUCUCAAG--CGACGUCUcGGUCCCa -5'
3639 3' -55.7 NC_001650.1 + 107518 0.66 0.930761
Target:  5'- cGUGGGGgaccUGCUGCAGAacaGgCAGGGc -3'
miRNA:   3'- cCAUCUCaa--GCGACGUCU---CgGUCCCa -5'
3639 3' -55.7 NC_001650.1 + 157233 0.66 0.935766
Target:  5'- uGGU-GAGgcaGCaGCAGGGCguGGGg -3'
miRNA:   3'- -CCAuCUCaagCGaCGUCUCGguCCCa -5'
3639 3' -55.7 NC_001650.1 + 85428 0.66 0.935766
Target:  5'- gGGUAGuAGUU-GUUGacuauGGGCCAGGGc -3'
miRNA:   3'- -CCAUC-UCAAgCGACgu---CUCGGUCCCa -5'
3639 3' -55.7 NC_001650.1 + 179860 0.66 0.935766
Target:  5'- -uUAGGGUUaaaGCUGgagcuaggguUAGGGCUAGGGUu -3'
miRNA:   3'- ccAUCUCAAg--CGAC----------GUCUCGGUCCCA- -5'
3639 3' -55.7 NC_001650.1 + 168492 0.67 0.902184
Target:  5'- aGGUAGGcagUUGCcagGCAGGGUCuGGGGUg -3'
miRNA:   3'- -CCAUCUca-AGCGa--CGUCUCGG-UCCCA- -5'
3639 3' -55.7 NC_001650.1 + 13108 0.68 0.875161
Target:  5'- gGGuUAGGGUUaaaGCUGgagcuaggguUAGGGCUAGGGUu -3'
miRNA:   3'- -CC-AUCUCAAg--CGAC----------GUCUCGGUCCCA- -5'
3639 3' -55.7 NC_001650.1 + 13240 0.68 0.875161
Target:  5'- gGGuUAGGGUUaaaGCUGgagcuaggguUAGGGCUAGGGUu -3'
miRNA:   3'- -CC-AUCUCAAg--CGAC----------GUCUCGGUCCCA- -5'
3639 3' -55.7 NC_001650.1 + 180054 0.69 0.793423
Target:  5'- gGGcUAGGGUUagGCUGCAGguaaAGUUAGGGUu -3'
miRNA:   3'- -CC-AUCUCAAg-CGACGUC----UCGGUCCCA- -5'
3639 3' -55.7 NC_001650.1 + 13347 0.69 0.793423
Target:  5'- gGGcUAGGGUUagGCUGCAGguaaAGUUAGGGUu -3'
miRNA:   3'- -CC-AUCUCAAg-CGACGUC----UCGGUCCCA- -5'
3639 3' -55.7 NC_001650.1 + 179899 0.69 0.802378
Target:  5'- gGGuUAGGGUUaaaGCUGgagcuaggguUAGAGCUAGGGUu -3'
miRNA:   3'- -CC-AUCUCAAg--CGAC----------GUCUCGGUCCCA- -5'
3639 3' -55.7 NC_001650.1 + 179767 0.69 0.802378
Target:  5'- gGGuUAGGGUUaaaGCUGgagcuaggguUAGAGCUAGGGUu -3'
miRNA:   3'- -CC-AUCUCAAg--CGAC----------GUCUCGGUCCCA- -5'
3639 3' -55.7 NC_001650.1 + 13192 0.69 0.802378
Target:  5'- gGGuUAGGGUUaaaGCUGgagcuaggguUAGAGCUAGGGUu -3'
miRNA:   3'- -CC-AUCUCAAg--CGAC----------GUCUCGGUCCCA- -5'
3639 3' -55.7 NC_001650.1 + 13060 0.69 0.802378
Target:  5'- gGGuUAGGGUUaaaGCUGgagcuaggguUAGAGCUAGGGUu -3'
miRNA:   3'- -CC-AUCUCAAg--CGAC----------GUCUCGGUCCCA- -5'
3639 3' -55.7 NC_001650.1 + 81770 0.69 0.81118
Target:  5'- uGGUGGAGUUCGCcuccgccgUGCAGAcGCagAGGa- -3'
miRNA:   3'- -CCAUCUCAAGCG--------ACGUCU-CGg-UCCca -5'
3639 3' -55.7 NC_001650.1 + 22156 0.68 0.860339
Target:  5'- aGGUAGccGGgggUC-CUGCAGAaggagGCCGGGGa -3'
miRNA:   3'- -CCAUC--UCa--AGcGACGUCU-----CGGUCCCa -5'
3639 3' -55.7 NC_001650.1 + 179947 0.68 0.875161
Target:  5'- gGGuUAGGGUUaaaGCUGgagcuaggguUAGGGCUAGGGUu -3'
miRNA:   3'- -CC-AUCUCAAg--CGAC----------GUCUCGGUCCCA- -5'
3639 3' -55.7 NC_001650.1 + 179815 0.68 0.875161
Target:  5'- gGGuUAGGGUUaaaGCUGgagcuaggguUAGGGCUAGGGUu -3'
miRNA:   3'- -CC-AUCUCAAg--CGAC----------GUCUCGGUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.