miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3639 5' -52 NC_001650.1 + 117807 0.66 0.992466
Target:  5'- gCGUCCaGGggCUGGCGGAcGugUUCg -3'
miRNA:   3'- gGUAGGaCCaaGACCGUCU-CuuGAGa -5'
3639 5' -52 NC_001650.1 + 78660 0.66 0.992255
Target:  5'- gCguUCCUGGaccgccacggcCUGGCGGAGGACg-- -3'
miRNA:   3'- -GguAGGACCaa---------GACCGUCUCUUGaga -5'
3639 5' -52 NC_001650.1 + 3254 0.66 0.991366
Target:  5'- gCCAUCUUGGauccccaugcCUGGCAGGcuGCUCc -3'
miRNA:   3'- -GGUAGGACCaa--------GACCGUCUcuUGAGa -5'
3639 5' -52 NC_001650.1 + 169961 0.66 0.991366
Target:  5'- gCCAUCUUGGauccccaugcCUGGCAGGcuGCUCc -3'
miRNA:   3'- -GGUAGGACCaa--------GACCGUCUcuUGAGa -5'
3639 5' -52 NC_001650.1 + 137275 0.66 0.991366
Target:  5'- gCCGUCCcGGg-CUGGCAGAugaaGGAC-CUg -3'
miRNA:   3'- -GGUAGGaCCaaGACCGUCU----CUUGaGA- -5'
3639 5' -52 NC_001650.1 + 83827 0.66 0.987291
Target:  5'- cCCucCCUGGUcgCUGGCuucGAGAGC-CUg -3'
miRNA:   3'- -GGuaGGACCAa-GACCGu--CUCUUGaGA- -5'
3639 5' -52 NC_001650.1 + 173577 0.66 0.986975
Target:  5'- aCCAUggccaaugaaggcCCUGGUUgCUgGGCAGAcugugggGGACUCa -3'
miRNA:   3'- -GGUA-------------GGACCAA-GA-CCGUCU-------CUUGAGa -5'
3639 5' -52 NC_001650.1 + 6870 0.66 0.986975
Target:  5'- aCCAUggccaaugaaggcCCUGGUUgCUgGGCAGAcugugggGGACUCa -3'
miRNA:   3'- -GGUA-------------GGACCAA-GA-CCGUCU-------CUUGAGa -5'
3639 5' -52 NC_001650.1 + 58584 0.68 0.974882
Target:  5'- gCGUCCgGGUggaUGGaggacagGGAGAGCUCUg -3'
miRNA:   3'- gGUAGGaCCAag-ACCg------UCUCUUGAGA- -5'
3639 5' -52 NC_001650.1 + 114404 0.68 0.969241
Target:  5'- gCGUCCUGGagCgGGCGGuGGACgagCUu -3'
miRNA:   3'- gGUAGGACCaaGaCCGUCuCUUGa--GA- -5'
3639 5' -52 NC_001650.1 + 80619 0.68 0.968323
Target:  5'- uCCAUCCUGuucaacagcugcacGUUCUGgggcGCGGAGAuggcggGCUCg -3'
miRNA:   3'- -GGUAGGAC--------------CAAGAC----CGUCUCU------UGAGa -5'
3639 5' -52 NC_001650.1 + 94129 0.69 0.959171
Target:  5'- gCCAcCCUGGUUCagGGaCAGGGu-CUCg -3'
miRNA:   3'- -GGUaGGACCAAGa-CC-GUCUCuuGAGa -5'
3639 5' -52 NC_001650.1 + 145672 0.7 0.910229
Target:  5'- cCCGagCgCUGGUacagCUGGCAgGAGAGCUCc -3'
miRNA:   3'- -GGUa-G-GACCAa---GACCGU-CUCUUGAGa -5'
3639 5' -52 NC_001650.1 + 49295 0.71 0.903987
Target:  5'- uCCAggUCCUGGUUCUGGaggaugaaGGuGGugUCa -3'
miRNA:   3'- -GGU--AGGACCAAGACCg-------UCuCUugAGa -5'
3639 5' -52 NC_001650.1 + 72182 0.71 0.890782
Target:  5'- cCCGcCCaGGUgCUGGCAGAuGAACUUUa -3'
miRNA:   3'- -GGUaGGaCCAaGACCGUCU-CUUGAGA- -5'
3639 5' -52 NC_001650.1 + 145921 0.72 0.861594
Target:  5'- gCCAccUCCUGugccaGUUCUacguggcgGGCGGGGAGCUCUc -3'
miRNA:   3'- -GGU--AGGAC-----CAAGA--------CCGUCUCUUGAGA- -5'
3639 5' -52 NC_001650.1 + 37554 0.74 0.765161
Target:  5'- gCCAUCCUGGacCUGGUgauGGGGGACg-- -3'
miRNA:   3'- -GGUAGGACCaaGACCG---UCUCUUGaga -5'
3639 5' -52 NC_001650.1 + 82344 0.81 0.416349
Target:  5'- --cUCCUGGUcCUGGCAGAGGgcGCUCa -3'
miRNA:   3'- gguAGGACCAaGACCGUCUCU--UGAGa -5'
3639 5' -52 NC_001650.1 + 42616 1.11 0.005984
Target:  5'- aCCAUCCUGGUUCUGGCAGAGAACUCUg -3'
miRNA:   3'- -GGUAGGACCAAGACCGUCUCUUGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.