miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
364 3' -54.9 AC_000011.1 + 6129 0.65 0.651556
Target:  5'- cUGACCAGaUGGACgagggGCUCUugaaaggcaucucCGCCGg -3'
miRNA:   3'- cGCUGGUC-AUCUGaa---CGAGGu------------GCGGC- -5'
364 3' -54.9 AC_000011.1 + 33786 0.66 0.622107
Target:  5'- uCGGCCGGUGGugUcGCaUCAgGCCc -3'
miRNA:   3'- cGCUGGUCAUCugAaCGaGGUgCGGc -5'
364 3' -54.9 AC_000011.1 + 17697 0.66 0.622107
Target:  5'- aGCGccuGCCcuGUGGuGC-UGUUCCACGCCu -3'
miRNA:   3'- -CGC---UGGu-CAUC-UGaACGAGGUGCGGc -5'
364 3' -54.9 AC_000011.1 + 9105 0.66 0.622107
Target:  5'- gGCGACguCAGcgAGAUgccGCUCCGcCGCUGg -3'
miRNA:   3'- -CGCUG--GUCa-UCUGaa-CGAGGU-GCGGC- -5'
364 3' -54.9 AC_000011.1 + 5442 0.66 0.622107
Target:  5'- cGCcuGCgGGcAGACUUccaaagguaaGCUCCGCGCCa -3'
miRNA:   3'- -CGc-UGgUCaUCUGAA----------CGAGGUGCGGc -5'
364 3' -54.9 AC_000011.1 + 17277 0.67 0.554675
Target:  5'- aGCGGuuGGggggAGGCUuccUGC-CCGCGCUGa -3'
miRNA:   3'- -CGCUggUCa---UCUGA---ACGaGGUGCGGC- -5'
364 3' -54.9 AC_000011.1 + 20900 0.67 0.554675
Target:  5'- uCGGCCAGa--ACaUGCUCUAUGCCa -3'
miRNA:   3'- cGCUGGUCaucUGaACGAGGUGCGGc -5'
364 3' -54.9 AC_000011.1 + 15878 0.67 0.543613
Target:  5'- gGCGGCCAGacgcgcGGCUucagGCgCCAgCGCCGg -3'
miRNA:   3'- -CGCUGGUCau----CUGAa---CGaGGU-GCGGC- -5'
364 3' -54.9 AC_000011.1 + 26513 0.67 0.532625
Target:  5'- gGCGGCCAGgcccaucugGGGCUgguaGCUCCACa--- -3'
miRNA:   3'- -CGCUGGUCa--------UCUGAa---CGAGGUGcggc -5'
364 3' -54.9 AC_000011.1 + 18004 0.69 0.458336
Target:  5'- cGCGACCc-UGGACUUGCcUCCuccccaGCCu -3'
miRNA:   3'- -CGCUGGucAUCUGAACG-AGGug----CGGc -5'
364 3' -54.9 AC_000011.1 + 3058 0.7 0.408802
Target:  5'- gGUGGCCAGcauauGGC-UGUUCC-CGCCGg -3'
miRNA:   3'- -CGCUGGUCau---CUGaACGAGGuGCGGC- -5'
364 3' -54.9 AC_000011.1 + 6894 0.74 0.216016
Target:  5'- cGCGACuCGGUcGGAC-UGCcCCACGCCc -3'
miRNA:   3'- -CGCUG-GUCA-UCUGaACGaGGUGCGGc -5'
364 3' -54.9 AC_000011.1 + 15115 1.1 0.000547
Target:  5'- aGCGACCAGUAGACUUGCUCCACGCCGc -3'
miRNA:   3'- -CGCUGGUCAUCUGAACGAGGUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.