miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3640 5' -54.3 NC_001650.1 + 21841 0.66 0.966817
Target:  5'- gACCCCAGCCccgcgggCAGCucAGAgacggCGCccACCc -3'
miRNA:   3'- -UGGGGUCGGaa-----GUCG--UCUa----GUGa-UGG- -5'
3640 5' -54.3 NC_001650.1 + 163326 0.66 0.966817
Target:  5'- gGCCCCGGCgg-CGGgGGAcgUgACUACUa -3'
miRNA:   3'- -UGGGGUCGgaaGUCgUCU--AgUGAUGG- -5'
3640 5' -54.3 NC_001650.1 + 80076 0.66 0.966499
Target:  5'- cGCgCCGGUUUUUauagcguccaauaGGCGG-UCGCUGCCa -3'
miRNA:   3'- -UGgGGUCGGAAG-------------UCGUCuAGUGAUGG- -5'
3640 5' -54.3 NC_001650.1 + 120751 0.66 0.963545
Target:  5'- aGCCCCAccgcGCCcu--GCAGGUCGCcggcGCCc -3'
miRNA:   3'- -UGGGGU----CGGaaguCGUCUAGUGa---UGG- -5'
3640 5' -54.3 NC_001650.1 + 158354 0.66 0.963206
Target:  5'- cGCCCCccucggcGGCCggggUCAGCGcGGUgGCgggUACCu -3'
miRNA:   3'- -UGGGG-------UCGGa---AGUCGU-CUAgUG---AUGG- -5'
3640 5' -54.3 NC_001650.1 + 83419 0.66 0.963206
Target:  5'- cGCCCCccuguucAGCUUggaCAGCAGGgcgCGCU-CCu -3'
miRNA:   3'- -UGGGG-------UCGGAa--GUCGUCUa--GUGAuGG- -5'
3640 5' -54.3 NC_001650.1 + 165369 0.66 0.960056
Target:  5'- aGCCCCuacgugugagcGGCCa--AGCAGA-CAgUGCCa -3'
miRNA:   3'- -UGGGG-----------UCGGaagUCGUCUaGUgAUGG- -5'
3640 5' -54.3 NC_001650.1 + 62210 0.66 0.960056
Target:  5'- cACCUCGGCCgaugaagaauUUCAGUGGGagGCUAUg -3'
miRNA:   3'- -UGGGGUCGG----------AAGUCGUCUagUGAUGg -5'
3640 5' -54.3 NC_001650.1 + 110794 0.66 0.960056
Target:  5'- gGCCCCGGgCgaucgcCAGCAGccUCAgaGCCa -3'
miRNA:   3'- -UGGGGUCgGaa----GUCGUCu-AGUgaUGG- -5'
3640 5' -54.3 NC_001650.1 + 101798 0.66 0.960056
Target:  5'- aGCCCgccucucagCAGCCg-CAGCAGG-CGCUaagGCCg -3'
miRNA:   3'- -UGGG---------GUCGGaaGUCGUCUaGUGA---UGG- -5'
3640 5' -54.3 NC_001650.1 + 135248 0.66 0.960056
Target:  5'- gGCCCgGGCCcagcUCAGUcagguagaacAGGUCACacACCg -3'
miRNA:   3'- -UGGGgUCGGa---AGUCG----------UCUAGUGa-UGG- -5'
3640 5' -54.3 NC_001650.1 + 131063 0.66 0.960056
Target:  5'- aGCCCCccggucuuGGCCUcgagCAGCAGggCG--GCCg -3'
miRNA:   3'- -UGGGG--------UCGGAa---GUCGUCuaGUgaUGG- -5'
3640 5' -54.3 NC_001650.1 + 118783 0.66 0.956342
Target:  5'- gAUCCUGGCCUcgCAGCuGGUgaGCUGCg -3'
miRNA:   3'- -UGGGGUCGGAa-GUCGuCUAg-UGAUGg -5'
3640 5' -54.3 NC_001650.1 + 4574 0.66 0.956342
Target:  5'- uGCCCCAuGCCU--GGCAcGUCAUcucugGCCa -3'
miRNA:   3'- -UGGGGU-CGGAagUCGUcUAGUGa----UGG- -5'
3640 5' -54.3 NC_001650.1 + 171281 0.66 0.956342
Target:  5'- uGCCCCAuGCCU--GGCAcGUCAUcucugGCCa -3'
miRNA:   3'- -UGGGGU-CGGAagUCGUcUAGUGa----UGG- -5'
3640 5' -54.3 NC_001650.1 + 110604 0.66 0.956342
Target:  5'- cGCCCCAGCagcaaCAGCAGca-GCggACCc -3'
miRNA:   3'- -UGGGGUCGgaa--GUCGUCuagUGa-UGG- -5'
3640 5' -54.3 NC_001650.1 + 57772 0.66 0.956342
Target:  5'- uGCCCCAGCCg-CAGCuGcaacCACagGCCc -3'
miRNA:   3'- -UGGGGUCGGaaGUCGuCua--GUGa-UGG- -5'
3640 5' -54.3 NC_001650.1 + 132644 0.66 0.956342
Target:  5'- cCCCCAGCCa--GGCGGc---CUGCCu -3'
miRNA:   3'- uGGGGUCGGaagUCGUCuaguGAUGG- -5'
3640 5' -54.3 NC_001650.1 + 133944 0.66 0.9524
Target:  5'- gACCCCGGCa---GGCGGccgCAgUGCCc -3'
miRNA:   3'- -UGGGGUCGgaagUCGUCua-GUgAUGG- -5'
3640 5' -54.3 NC_001650.1 + 50833 0.66 0.9524
Target:  5'- gGCCCCGGCgCgcgagGGCGGcgaGCUGCCc -3'
miRNA:   3'- -UGGGGUCG-Gaag--UCGUCuagUGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.