miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3641 3' -53.1 NC_001650.1 + 139083 0.66 0.972922
Target:  5'- -aGGUAuaacuGUGGcUUG-GCGAGCUGGGg -3'
miRNA:   3'- caCCAU-----CACCaGACaCGUUCGAUCCa -5'
3641 3' -53.1 NC_001650.1 + 76222 0.67 0.960047
Target:  5'- aGUGGUAGUGGUg-GUGguGGCcgcuguaguGGUg -3'
miRNA:   3'- -CACCAUCACCAgaCACguUCGau-------CCA- -5'
3641 3' -53.1 NC_001650.1 + 143565 0.67 0.956262
Target:  5'- uGUGGUAGggggcgagGGUgaGgGCGagGGCUGGGUa -3'
miRNA:   3'- -CACCAUCa-------CCAgaCaCGU--UCGAUCCA- -5'
3641 3' -53.1 NC_001650.1 + 92670 0.67 0.956262
Target:  5'- -gGGUGGUGG-CUGUG-GGGCUGGu- -3'
miRNA:   3'- caCCAUCACCaGACACgUUCGAUCca -5'
3641 3' -53.1 NC_001650.1 + 134392 0.68 0.938717
Target:  5'- gGUGGUGGUGGUgUUGUGaucGCgUGGGg -3'
miRNA:   3'- -CACCAUCACCA-GACACguuCG-AUCCa -5'
3641 3' -53.1 NC_001650.1 + 42560 0.68 0.92846
Target:  5'- -aGGUAGUGaUCUGcUGaAGGCUGGGg -3'
miRNA:   3'- caCCAUCACcAGAC-ACgUUCGAUCCa -5'
3641 3' -53.1 NC_001650.1 + 177814 0.69 0.884713
Target:  5'- gGUGGUGGUGGUCUcUG-AGGUUuccAGGUa -3'
miRNA:   3'- -CACCAUCACCAGAcACgUUCGA---UCCA- -5'
3641 3' -53.1 NC_001650.1 + 11107 0.69 0.884713
Target:  5'- gGUGGUGGUGGUCUcUG-AGGUUuccAGGUa -3'
miRNA:   3'- -CACCAUCACCAGAcACgUUCGA---UCCA- -5'
3641 3' -53.1 NC_001650.1 + 66255 0.7 0.846387
Target:  5'- -aGGUAGUGGg-UGUGCAGGUUcuGGUu -3'
miRNA:   3'- caCCAUCACCagACACGUUCGAu-CCA- -5'
3641 3' -53.1 NC_001650.1 + 50705 0.71 0.82958
Target:  5'- -cGGUGGUGGUaaGUGaAAGUUGGGg -3'
miRNA:   3'- caCCAUCACCAgaCACgUUCGAUCCa -5'
3641 3' -53.1 NC_001650.1 + 5737 0.71 0.82958
Target:  5'- uGUGGU-GUGGUgUGUGauguGGGCUGGGc -3'
miRNA:   3'- -CACCAuCACCAgACACg---UUCGAUCCa -5'
3641 3' -53.1 NC_001650.1 + 172444 0.71 0.82958
Target:  5'- uGUGGU-GUGGUgUGUGauguGGGCUGGGc -3'
miRNA:   3'- -CACCAuCACCAgACACg---UUCGAUCCa -5'
3641 3' -53.1 NC_001650.1 + 162435 0.71 0.81202
Target:  5'- ---uUAGUGGUCcaUGggcGCAAGCUAGGUa -3'
miRNA:   3'- caccAUCACCAG--ACa--CGUUCGAUCCA- -5'
3641 3' -53.1 NC_001650.1 + 42938 1.08 0.005892
Target:  5'- cGUGGUAGUGGUCUGUGCAAGCUAGGUg -3'
miRNA:   3'- -CACCAUCACCAGACACGUUCGAUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.