miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3641 5' -51 NC_001650.1 + 140327 0.66 0.993952
Target:  5'- cCGGCgugAGCUUCCUGCuuccuGGACCcCUGGa -3'
miRNA:   3'- -GUUGaa-UCGAAGGGUG-----CCUGGuGAUU- -5'
3641 5' -51 NC_001650.1 + 51512 0.66 0.993952
Target:  5'- cCAGCUccGCgugCCCGCccuuGGGCCACUc- -3'
miRNA:   3'- -GUUGAauCGaa-GGGUG----CCUGGUGAuu -5'
3641 5' -51 NC_001650.1 + 156464 0.66 0.993952
Target:  5'- gGGC-UGGUga-CCGCGGGCCACg-- -3'
miRNA:   3'- gUUGaAUCGaagGGUGCCUGGUGauu -5'
3641 5' -51 NC_001650.1 + 140089 0.66 0.993952
Target:  5'- cUAGCcUGGCUUCCUGCuuccuGGACCcCUGGa -3'
miRNA:   3'- -GUUGaAUCGAAGGGUG-----CCUGGuGAUU- -5'
3641 5' -51 NC_001650.1 + 140189 0.66 0.993952
Target:  5'- uGGCcUAGCUUCCUGCuuccuGGACCcCUGGa -3'
miRNA:   3'- gUUGaAUCGAAGGGUG-----CCUGGuGAUU- -5'
3641 5' -51 NC_001650.1 + 15198 0.66 0.993004
Target:  5'- cCAAUgaAGCgUCgCGCGGGCCGCg-- -3'
miRNA:   3'- -GUUGaaUCGaAGgGUGCCUGGUGauu -5'
3641 5' -51 NC_001650.1 + 181905 0.66 0.993004
Target:  5'- cCAAUgaAGCgUCgCGCGGGCCGCg-- -3'
miRNA:   3'- -GUUGaaUCGaAGgGUGCCUGGUGauu -5'
3641 5' -51 NC_001650.1 + 121525 0.66 0.993004
Target:  5'- cCGGCUggucagGGaggUCCUGCGGACCGCc-- -3'
miRNA:   3'- -GUUGAa-----UCga-AGGGUGCCUGGUGauu -5'
3641 5' -51 NC_001650.1 + 158114 0.66 0.992903
Target:  5'- gCAGCUggGGCUggCCCAUGGAgguugcuUCGCUGu -3'
miRNA:   3'- -GUUGAa-UCGAa-GGGUGCCU-------GGUGAUu -5'
3641 5' -51 NC_001650.1 + 65054 0.66 0.991942
Target:  5'- gAGC-UGGCccUCCUGCGGGCCAUg-- -3'
miRNA:   3'- gUUGaAUCGa-AGGGUGCCUGGUGauu -5'
3641 5' -51 NC_001650.1 + 170701 0.67 0.989434
Target:  5'- gGGCggAGCUcgCCCACGGAcagaguccCCAUUGg -3'
miRNA:   3'- gUUGaaUCGAa-GGGUGCCU--------GGUGAUu -5'
3641 5' -51 NC_001650.1 + 175776 0.67 0.989434
Target:  5'- --uCUUGGUgcaCUUugGGACCACUAGu -3'
miRNA:   3'- guuGAAUCGaa-GGGugCCUGGUGAUU- -5'
3641 5' -51 NC_001650.1 + 3994 0.67 0.989434
Target:  5'- gGGCggAGCUcgCCCACGGAcagaguccCCAUUGg -3'
miRNA:   3'- gUUGaaUCGAa-GGGUGCCU--------GGUGAUu -5'
3641 5' -51 NC_001650.1 + 9069 0.67 0.989434
Target:  5'- --uCUUGGUgcaCUUugGGACCACUAGu -3'
miRNA:   3'- guuGAAUCGaa-GGGugCCUGGUGAUU- -5'
3641 5' -51 NC_001650.1 + 82584 0.7 0.947605
Target:  5'- gGACgcgAGCUcguUCCuCGCGGGCCugUGc -3'
miRNA:   3'- gUUGaa-UCGA---AGG-GUGCCUGGugAUu -5'
3641 5' -51 NC_001650.1 + 122925 0.7 0.927695
Target:  5'- gCAGC--AGCUUCCCGCGGccagggagGCCACc-- -3'
miRNA:   3'- -GUUGaaUCGAAGGGUGCC--------UGGUGauu -5'
3641 5' -51 NC_001650.1 + 59764 0.7 0.927695
Target:  5'- gGGCgaGGCgcccCCCACGGACaCGCUGGa -3'
miRNA:   3'- gUUGaaUCGaa--GGGUGCCUG-GUGAUU- -5'
3641 5' -51 NC_001650.1 + 144621 0.71 0.890133
Target:  5'- ---gUUAGCUUCCgCGCGGAUCGgUGAg -3'
miRNA:   3'- guugAAUCGAAGG-GUGCCUGGUgAUU- -5'
3641 5' -51 NC_001650.1 + 114109 0.72 0.875618
Target:  5'- cCAGCUgGGCUUUuucacggccaCCACGGugCACUAc -3'
miRNA:   3'- -GUUGAaUCGAAG----------GGUGCCugGUGAUu -5'
3641 5' -51 NC_001650.1 + 139919 0.72 0.860163
Target:  5'- uGGCcUAGCUUCCU--GGACCGCUGGa -3'
miRNA:   3'- gUUGaAUCGAAGGGugCCUGGUGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.