miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3643 5' -45.9 NC_001650.1 + 89820 0.66 0.999992
Target:  5'- cACC-GGGUGCUGGuGGGuaagagCUCCGAc -3'
miRNA:   3'- uUGGaUUCAUGAUCuCUUua----GAGGCU- -5'
3643 5' -45.9 NC_001650.1 + 78004 0.66 0.999988
Target:  5'- gGACCcgagGGGUgcuacuacGCUAGGGuaGAGUCUCUGAu -3'
miRNA:   3'- -UUGGa---UUCA--------UGAUCUC--UUUAGAGGCU- -5'
3643 5' -45.9 NC_001650.1 + 49109 0.67 0.999973
Target:  5'- gGACCagucuagauacguGGUGgUGGAGAccguGGUCUCCGAc -3'
miRNA:   3'- -UUGGau-----------UCAUgAUCUCU----UUAGAGGCU- -5'
3643 5' -45.9 NC_001650.1 + 178079 0.67 0.999969
Target:  5'- gGGCCUguaaaGAGcGCUGGGGucAGGUCUCUGGa -3'
miRNA:   3'- -UUGGA-----UUCaUGAUCUC--UUUAGAGGCU- -5'
3643 5' -45.9 NC_001650.1 + 11372 0.67 0.999969
Target:  5'- gGGCCUguaaaGAGcGCUGGGGucAGGUCUCUGGa -3'
miRNA:   3'- -UUGGA-----UUCaUGAUCUC--UUUAGAGGCU- -5'
3643 5' -45.9 NC_001650.1 + 43004 0.67 0.999944
Target:  5'- -uCCUAA-UACUucAGAAGUCUCCGGa -3'
miRNA:   3'- uuGGAUUcAUGAucUCUUUAGAGGCU- -5'
3643 5' -45.9 NC_001650.1 + 36552 0.68 0.99987
Target:  5'- gGACCUGcugaGGUACUuuauGAcgcacgugGAGAUCUCUGAg -3'
miRNA:   3'- -UUGGAU----UCAUGAu---CU--------CUUUAGAGGCU- -5'
3643 5' -45.9 NC_001650.1 + 22508 0.69 0.99955
Target:  5'- cGCCUccGAGUAgaGGAGGuccagCUCCGAg -3'
miRNA:   3'- uUGGA--UUCAUgaUCUCUuua--GAGGCU- -5'
3643 5' -45.9 NC_001650.1 + 102408 0.69 0.999297
Target:  5'- uGCCUgGAGUGCgccUGGGGguGUCUCUGGg -3'
miRNA:   3'- uUGGA-UUCAUG---AUCUCuuUAGAGGCU- -5'
3643 5' -45.9 NC_001650.1 + 28026 0.7 0.998929
Target:  5'- aGACC---GUGCUGGAGAGGcUCUCgGAg -3'
miRNA:   3'- -UUGGauuCAUGAUCUCUUU-AGAGgCU- -5'
3643 5' -45.9 NC_001650.1 + 40986 0.71 0.997235
Target:  5'- aGACUUAAGc-CUAGAGAcuUCUCCGu -3'
miRNA:   3'- -UUGGAUUCauGAUCUCUuuAGAGGCu -5'
3643 5' -45.9 NC_001650.1 + 59642 0.72 0.993743
Target:  5'- cACCUGAG-GCUGGAGggGUcCUUCGc -3'
miRNA:   3'- uUGGAUUCaUGAUCUCuuUA-GAGGCu -5'
3643 5' -45.9 NC_001650.1 + 122801 0.73 0.983711
Target:  5'- gGugCgcaAGGUGCUGGAGu--UCUCCGAg -3'
miRNA:   3'- -UugGa--UUCAUGAUCUCuuuAGAGGCU- -5'
3643 5' -45.9 NC_001650.1 + 43176 1.08 0.033127
Target:  5'- gAACCUAAGUACUAGAGAAAUCUCCGAa -3'
miRNA:   3'- -UUGGAUUCAUGAUCUCUUUAGAGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.