miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3644 5' -45.3 NC_001650.1 + 177711 0.66 0.999997
Target:  5'- ---cCCACGUUaaucgguagCCUCGgu--CCUUACa -3'
miRNA:   3'- uuuuGGUGCAA---------GGAGCauuuGGAAUG- -5'
3644 5' -45.3 NC_001650.1 + 11004 0.66 0.999997
Target:  5'- ---cCCACGUUaaucgguagCCUCGgu--CCUUACa -3'
miRNA:   3'- uuuuGGUGCAA---------GGAGCauuuGGAAUG- -5'
3644 5' -45.3 NC_001650.1 + 82779 0.66 0.999995
Target:  5'- cGAGCuCGCG-UCCUCGgcgGGCCggUACa -3'
miRNA:   3'- uUUUG-GUGCaAGGAGCau-UUGGa-AUG- -5'
3644 5' -45.3 NC_001650.1 + 158002 0.66 0.999995
Target:  5'- uGGACgGCG-UCCUCGUAGcCCgagGCc -3'
miRNA:   3'- uUUUGgUGCaAGGAGCAUUuGGaa-UG- -5'
3644 5' -45.3 NC_001650.1 + 156922 0.66 0.999995
Target:  5'- --cGCCGacg-CCUCGUGAGCCUc-- -3'
miRNA:   3'- uuuUGGUgcaaGGAGCAUUUGGAaug -5'
3644 5' -45.3 NC_001650.1 + 35928 0.66 0.999993
Target:  5'- ---uCCACGUUugUCUCGaAGACCUcGCa -3'
miRNA:   3'- uuuuGGUGCAA--GGAGCaUUUGGAaUG- -5'
3644 5' -45.3 NC_001650.1 + 135761 0.66 0.999993
Target:  5'- cAGGACCACGUaCCUgG-AGGCCgccaUGCu -3'
miRNA:   3'- -UUUUGGUGCAaGGAgCaUUUGGa---AUG- -5'
3644 5' -45.3 NC_001650.1 + 81174 0.67 0.999986
Target:  5'- -uGGCCACGUgcUUCUgGUGGGCCa--- -3'
miRNA:   3'- uuUUGGUGCA--AGGAgCAUUUGGaaug -5'
3644 5' -45.3 NC_001650.1 + 132155 0.67 0.999973
Target:  5'- cAGGACCACGUggUCCacCGUGAGCaggGCc -3'
miRNA:   3'- -UUUUGGUGCA--AGGa-GCAUUUGgaaUG- -5'
3644 5' -45.3 NC_001650.1 + 64775 0.67 0.999964
Target:  5'- --cACCACGUUCCU---GGACCaUGCc -3'
miRNA:   3'- uuuUGGUGCAAGGAgcaUUUGGaAUG- -5'
3644 5' -45.3 NC_001650.1 + 130017 0.68 0.999913
Target:  5'- cGAGGCCGCGggCCUCaaGGGCCa--- -3'
miRNA:   3'- -UUUUGGUGCaaGGAGcaUUUGGaaug -5'
3644 5' -45.3 NC_001650.1 + 128390 0.68 0.999885
Target:  5'- ---uCCGCGUUCCUCGc-GGCCa--- -3'
miRNA:   3'- uuuuGGUGCAAGGAGCauUUGGaaug -5'
3644 5' -45.3 NC_001650.1 + 121861 0.69 0.99985
Target:  5'- --cGCCAgGUcgUCCUCGggGGGCCUggGCa -3'
miRNA:   3'- uuuUGGUgCA--AGGAGCa-UUUGGAa-UG- -5'
3644 5' -45.3 NC_001650.1 + 72290 0.69 0.999805
Target:  5'- gAGGACCugGUggggaggUUCGUGAACCUgUACa -3'
miRNA:   3'- -UUUUGGugCAag-----GAGCAUUUGGA-AUG- -5'
3644 5' -45.3 NC_001650.1 + 109649 0.69 0.999805
Target:  5'- cAGGCCGCaggCCUCGUucACCUUGu -3'
miRNA:   3'- uUUUGGUGcaaGGAGCAuuUGGAAUg -5'
3644 5' -45.3 NC_001650.1 + 37311 0.71 0.998536
Target:  5'- cGAGGCCACG--CC-CGUGAACCcgUACa -3'
miRNA:   3'- -UUUUGGUGCaaGGaGCAUUUGGa-AUG- -5'
3644 5' -45.3 NC_001650.1 + 51389 0.71 0.998225
Target:  5'- ----aCACGUUCC-CGUAGACCacGCg -3'
miRNA:   3'- uuuugGUGCAAGGaGCAUUUGGaaUG- -5'
3644 5' -45.3 NC_001650.1 + 121235 0.71 0.99786
Target:  5'- --uGCCucaaGUUCCUgGUGAACCUggGCa -3'
miRNA:   3'- uuuUGGug--CAAGGAgCAUUUGGAa-UG- -5'
3644 5' -45.3 NC_001650.1 + 82589 0.72 0.996371
Target:  5'- cGAGCU-CGUUCCUCGcGGGCCUgUGCa -3'
miRNA:   3'- uUUUGGuGCAAGGAGCaUUUGGA-AUG- -5'
3644 5' -45.3 NC_001650.1 + 74538 0.8 0.86058
Target:  5'- cGGGGCCACGUUCCUCauGUAGACgCUgUACa -3'
miRNA:   3'- -UUUUGGUGCAAGGAG--CAUUUG-GA-AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.