miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3645 3' -52.1 NC_001650.1 + 56276 0.66 0.992149
Target:  5'- uGCGGUcgGCcgAGAGUGUCUuugGGGGAa-- -3'
miRNA:   3'- -CGUCA--CGuaUCUCACGGA---CCUCUagg -5'
3645 3' -52.1 NC_001650.1 + 173453 0.66 0.992149
Target:  5'- uGCAGUgaGCAcccccUAGucUGCCUGGcaacccAGGUCCc -3'
miRNA:   3'- -CGUCA--CGU-----AUCucACGGACC------UCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 84360 0.66 0.992149
Target:  5'- aGUGGUccuGC-UAGAGUuCCUGGcAGAUCUg -3'
miRNA:   3'- -CGUCA---CGuAUCUCAcGGACC-UCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 6746 0.66 0.992149
Target:  5'- uGCAGUgaGCAcccccUAGucUGCCUGGcaacccAGGUCCc -3'
miRNA:   3'- -CGUCA--CGU-----AUCucACGGACC------UCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 111706 0.66 0.991131
Target:  5'- cGCGGcgGCGgggaucaccagcccgGGGGUgGCCUGGGGuAUCUu -3'
miRNA:   3'- -CGUCa-CGUa--------------UCUCA-CGGACCUC-UAGG- -5'
3645 3' -52.1 NC_001650.1 + 71773 0.66 0.991012
Target:  5'- aGCucGUGCGccgaGGGGUGCa-GGAGGUCg -3'
miRNA:   3'- -CGu-CACGUa---UCUCACGgaCCUCUAGg -5'
3645 3' -52.1 NC_001650.1 + 125568 0.66 0.989748
Target:  5'- --uGUGCAUgAGAGUGCC-GGuugaAGGUCg -3'
miRNA:   3'- cguCACGUA-UCUCACGGaCC----UCUAGg -5'
3645 3' -52.1 NC_001650.1 + 163233 0.66 0.989748
Target:  5'- gGCGGUGgAUGGGGUGgaUGGGGugaAUCg -3'
miRNA:   3'- -CGUCACgUAUCUCACggACCUC---UAGg -5'
3645 3' -52.1 NC_001650.1 + 67206 0.66 0.989748
Target:  5'- uGCAGgGCGUAcGGGUGCCcGGAcagGAUgagCCu -3'
miRNA:   3'- -CGUCaCGUAU-CUCACGGaCCU---CUA---GG- -5'
3645 3' -52.1 NC_001650.1 + 137736 0.66 0.988349
Target:  5'- aGCGGgUGCA---GGUGCgagcacggGGAGAUCCu -3'
miRNA:   3'- -CGUC-ACGUaucUCACGga------CCUCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 58690 0.66 0.988349
Target:  5'- aCGGUcGCuguuacggGGAGaGCCUGGAcugGAUCCu -3'
miRNA:   3'- cGUCA-CGua------UCUCaCGGACCU---CUAGG- -5'
3645 3' -52.1 NC_001650.1 + 102427 0.66 0.986314
Target:  5'- gGCGGcucccugaaagaacUGCcUGGAGUgcGCCUGGGGGUg- -3'
miRNA:   3'- -CGUC--------------ACGuAUCUCA--CGGACCUCUAgg -5'
3645 3' -52.1 NC_001650.1 + 68215 0.66 0.985111
Target:  5'- aGCGGUuCcUGGAGUGCCUGuacGAGugcgCCu -3'
miRNA:   3'- -CGUCAcGuAUCUCACGGAC---CUCua--GG- -5'
3645 3' -52.1 NC_001650.1 + 170646 0.67 0.983255
Target:  5'- aGUGGUGCc--GGGUGCCUGGcAGGc-- -3'
miRNA:   3'- -CGUCACGuauCUCACGGACC-UCUagg -5'
3645 3' -52.1 NC_001650.1 + 3939 0.67 0.983255
Target:  5'- aGUGGUGCc--GGGUGCCUGGcAGGc-- -3'
miRNA:   3'- -CGUCACGuauCUCACGGACC-UCUagg -5'
3645 3' -52.1 NC_001650.1 + 68796 0.67 0.981229
Target:  5'- cCAGUGCGUGGGGcagGCC-GGGGc-CCu -3'
miRNA:   3'- cGUCACGUAUCUCa--CGGaCCUCuaGG- -5'
3645 3' -52.1 NC_001650.1 + 5797 0.67 0.981229
Target:  5'- uGUGGUGagggGUAGAGUGaggGGGGAUCUu -3'
miRNA:   3'- -CGUCACg---UAUCUCACggaCCUCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 63722 0.67 0.979025
Target:  5'- uGCAGUagcacGCGUGGAagGCCUGcccGAGGUCUu -3'
miRNA:   3'- -CGUCA-----CGUAUCUcaCGGAC---CUCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 94125 0.67 0.979025
Target:  5'- cGCcGUGCAcaUAGAGacagGCgaGGAG-UCCa -3'
miRNA:   3'- -CGuCACGU--AUCUCa---CGgaCCUCuAGG- -5'
3645 3' -52.1 NC_001650.1 + 12087 0.68 0.971265
Target:  5'- -aGGUGCAUGGGG-GUCaUGGGGGUa- -3'
miRNA:   3'- cgUCACGUAUCUCaCGG-ACCUCUAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.