miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3645 3' -52.1 NC_001650.1 + 44122 1.14 0.003846
Target:  5'- aGCAGUGCAUAGAGUGCCUGGAGAUCCc -3'
miRNA:   3'- -CGUCACGUAUCUCACGGACCUCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 156391 0.76 0.660535
Target:  5'- gGCAGUGC--GGGGUGacCCUGGAcAUCCa -3'
miRNA:   3'- -CGUCACGuaUCUCAC--GGACCUcUAGG- -5'
3645 3' -52.1 NC_001650.1 + 15179 0.75 0.68125
Target:  5'- cGCGGcGC--GGGGUGUCUGGGGGUCg -3'
miRNA:   3'- -CGUCaCGuaUCUCACGGACCUCUAGg -5'
3645 3' -52.1 NC_001650.1 + 181886 0.75 0.68125
Target:  5'- cGCGGcGC--GGGGUGUCUGGGGGUCg -3'
miRNA:   3'- -CGUCaCGuaUCUCACGGACCUCUAGg -5'
3645 3' -52.1 NC_001650.1 + 48105 0.74 0.751933
Target:  5'- gGCGGUGUAcAGcAGgaugGCCaGGGGGUCCa -3'
miRNA:   3'- -CGUCACGUaUC-UCa---CGGaCCUCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 90529 0.72 0.825114
Target:  5'- gGCGGUGgCAaAGguguucaaggagaGGUGCCUGGAGGgcuUCCc -3'
miRNA:   3'- -CGUCAC-GUaUC-------------UCACGGACCUCU---AGG- -5'
3645 3' -52.1 NC_001650.1 + 43878 0.72 0.833658
Target:  5'- aCAGcGCAUAGAGUGUCugaguucugguaaUGGAGGaucUCCa -3'
miRNA:   3'- cGUCaCGUAUCUCACGG-------------ACCUCU---AGG- -5'
3645 3' -52.1 NC_001650.1 + 24340 0.72 0.842837
Target:  5'- aGCAGgagGagGUGGGGgagGCgUGGAGGUCCc -3'
miRNA:   3'- -CGUCa--Cg-UAUCUCa--CGgACCUCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 100290 0.72 0.850973
Target:  5'- cGCAgGUGCGgggAGAGgcgcGCCUcGGGGGUCa -3'
miRNA:   3'- -CGU-CACGUa--UCUCa---CGGA-CCUCUAGg -5'
3645 3' -52.1 NC_001650.1 + 66766 0.72 0.850973
Target:  5'- -gAGUGgGUGGAGaugGCgUGGaAGAUCCg -3'
miRNA:   3'- cgUCACgUAUCUCa--CGgACC-UCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 156318 0.71 0.895255
Target:  5'- gGCGGUGC-UGGAgGUGCCccUGGgcaaccuggccgGGGUCCu -3'
miRNA:   3'- -CGUCACGuAUCU-CACGG--ACC------------UCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 23465 0.7 0.920092
Target:  5'- uGCAGcccacCGUGGGGUGCCUcaGGAUCCc -3'
miRNA:   3'- -CGUCac---GUAUCUCACGGAccUCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 54793 0.7 0.925687
Target:  5'- cCAG-GgGUAGcGUGCC-GGGGGUCCa -3'
miRNA:   3'- cGUCaCgUAUCuCACGGaCCUCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 20860 0.69 0.936134
Target:  5'- uGUAGUGUuuUGGGG-GUCUGGAaaGGUCCc -3'
miRNA:   3'- -CGUCACGu-AUCUCaCGGACCU--CUAGG- -5'
3645 3' -52.1 NC_001650.1 + 178675 0.69 0.940986
Target:  5'- -gAGUGCAUGGGGgucccggugGUCgcgGuGAGGUCCa -3'
miRNA:   3'- cgUCACGUAUCUCa--------CGGa--C-CUCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 11968 0.69 0.940986
Target:  5'- -gAGUGCAUGGGGgucccggugGUCgcgGuGAGGUCCa -3'
miRNA:   3'- cgUCACGUAUCUCa--------CGGa--C-CUCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 35936 0.69 0.949959
Target:  5'- -----aUAUAGAGUGCCUGGGGGagaacggguUCCc -3'
miRNA:   3'- cgucacGUAUCUCACGGACCUCU---------AGG- -5'
3645 3' -52.1 NC_001650.1 + 32806 0.68 0.957974
Target:  5'- -aGGUGac-AGAGaUGUCUGcGAGAUCCa -3'
miRNA:   3'- cgUCACguaUCUC-ACGGAC-CUCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 156668 0.68 0.961631
Target:  5'- cCAGUGCAccgcGGcGGUGUCUGGAGcugggCCa -3'
miRNA:   3'- cGUCACGUa---UC-UCACGGACCUCua---GG- -5'
3645 3' -52.1 NC_001650.1 + 98991 0.68 0.965062
Target:  5'- aGguG-GCAgccugGGAGUGCUucuggUGGGGGUUCa -3'
miRNA:   3'- -CguCaCGUa----UCUCACGG-----ACCUCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.