miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3645 3' -52.1 NC_001650.1 + 3939 0.67 0.983255
Target:  5'- aGUGGUGCc--GGGUGCCUGGcAGGc-- -3'
miRNA:   3'- -CGUCACGuauCUCACGGACC-UCUagg -5'
3645 3' -52.1 NC_001650.1 + 5797 0.67 0.981229
Target:  5'- uGUGGUGagggGUAGAGUGaggGGGGAUCUu -3'
miRNA:   3'- -CGUCACg---UAUCUCACggaCCUCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 6746 0.66 0.992149
Target:  5'- uGCAGUgaGCAcccccUAGucUGCCUGGcaacccAGGUCCc -3'
miRNA:   3'- -CGUCA--CGU-----AUCucACGGACC------UCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 11968 0.69 0.940986
Target:  5'- -gAGUGCAUGGGGgucccggugGUCgcgGuGAGGUCCa -3'
miRNA:   3'- cgUCACGUAUCUCa--------CGGa--C-CUCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 12087 0.68 0.971265
Target:  5'- -aGGUGCAUGGGG-GUCaUGGGGGUa- -3'
miRNA:   3'- cgUCACGUAUCUCaCGG-ACCUCUAgg -5'
3645 3' -52.1 NC_001650.1 + 12112 0.68 0.971265
Target:  5'- -aGGUGCAUGGGG-GUCaUGGGGGUa- -3'
miRNA:   3'- cgUCACGUAUCUCaCGG-ACCUCUAgg -5'
3645 3' -52.1 NC_001650.1 + 12137 0.68 0.971265
Target:  5'- -aGGUGCAUGGGG-GUCaUGGGGGUa- -3'
miRNA:   3'- cgUCACGUAUCUCaCGG-ACCUCUAgg -5'
3645 3' -52.1 NC_001650.1 + 15179 0.75 0.68125
Target:  5'- cGCGGcGC--GGGGUGUCUGGGGGUCg -3'
miRNA:   3'- -CGUCaCGuaUCUCACGGACCUCUAGg -5'
3645 3' -52.1 NC_001650.1 + 20860 0.69 0.936134
Target:  5'- uGUAGUGUuuUGGGG-GUCUGGAaaGGUCCc -3'
miRNA:   3'- -CGUCACGu-AUCUCaCGGACCU--CUAGG- -5'
3645 3' -52.1 NC_001650.1 + 23465 0.7 0.920092
Target:  5'- uGCAGcccacCGUGGGGUGCCUcaGGAUCCc -3'
miRNA:   3'- -CGUCac---GUAUCUCACGGAccUCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 24340 0.72 0.842837
Target:  5'- aGCAGgagGagGUGGGGgagGCgUGGAGGUCCc -3'
miRNA:   3'- -CGUCa--Cg-UAUCUCa--CGgACCUCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 32806 0.68 0.957974
Target:  5'- -aGGUGac-AGAGaUGUCUGcGAGAUCCa -3'
miRNA:   3'- cgUCACguaUCUC-ACGGAC-CUCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 35936 0.69 0.949959
Target:  5'- -----aUAUAGAGUGCCUGGGGGagaacggguUCCc -3'
miRNA:   3'- cgucacGUAUCUCACGGACCUCU---------AGG- -5'
3645 3' -52.1 NC_001650.1 + 43878 0.72 0.833658
Target:  5'- aCAGcGCAUAGAGUGUCugaguucugguaaUGGAGGaucUCCa -3'
miRNA:   3'- cGUCaCGUAUCUCACGG-------------ACCUCU---AGG- -5'
3645 3' -52.1 NC_001650.1 + 44122 1.14 0.003846
Target:  5'- aGCAGUGCAUAGAGUGCCUGGAGAUCCc -3'
miRNA:   3'- -CGUCACGUAUCUCACGGACCUCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 48105 0.74 0.751933
Target:  5'- gGCGGUGUAcAGcAGgaugGCCaGGGGGUCCa -3'
miRNA:   3'- -CGUCACGUaUC-UCa---CGGaCCUCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 54793 0.7 0.925687
Target:  5'- cCAG-GgGUAGcGUGCC-GGGGGUCCa -3'
miRNA:   3'- cGUCaCgUAUCuCACGGaCCUCUAGG- -5'
3645 3' -52.1 NC_001650.1 + 56276 0.66 0.992149
Target:  5'- uGCGGUcgGCcgAGAGUGUCUuugGGGGAa-- -3'
miRNA:   3'- -CGUCA--CGuaUCUCACGGA---CCUCUagg -5'
3645 3' -52.1 NC_001650.1 + 58690 0.66 0.988349
Target:  5'- aCGGUcGCuguuacggGGAGaGCCUGGAcugGAUCCu -3'
miRNA:   3'- cGUCA-CGua------UCUCaCGGACCU---CUAGG- -5'
3645 3' -52.1 NC_001650.1 + 63722 0.67 0.979025
Target:  5'- uGCAGUagcacGCGUGGAagGCCUGcccGAGGUCUu -3'
miRNA:   3'- -CGUCA-----CGUAUCUcaCGGAC---CUCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.