miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3645 5' -50.3 NC_001650.1 + 120847 0.66 0.997956
Target:  5'- aCUGGAGCgcuggCuGGCGCUCUccuacgcggcgGCGCUGg -3'
miRNA:   3'- -GGUCUUGa----GuCUGUGAGAua---------CGCGAC- -5'
3645 5' -50.3 NC_001650.1 + 178523 0.66 0.997211
Target:  5'- aCAGAcccacaugcACUCAGACACUCUGccccucacaccUGCa--- -3'
miRNA:   3'- gGUCU---------UGAGUCUGUGAGAU-----------ACGcgac -5'
3645 5' -50.3 NC_001650.1 + 107164 0.66 0.997211
Target:  5'- aCGGAcCUCAGuuuuGCAaUCUGaGCGCUGa -3'
miRNA:   3'- gGUCUuGAGUC----UGUgAGAUaCGCGAC- -5'
3645 5' -50.3 NC_001650.1 + 11816 0.66 0.997211
Target:  5'- aCAGAcccacaugcACUCAGACACUCUGccccucacaccUGCa--- -3'
miRNA:   3'- gGUCU---------UGAGUCUGUGAGAU-----------ACGcgac -5'
3645 5' -50.3 NC_001650.1 + 137771 0.66 0.996707
Target:  5'- gCCAGuucCUCGaGCugUUUAUGCaGCUGa -3'
miRNA:   3'- -GGUCuu-GAGUcUGugAGAUACG-CGAC- -5'
3645 5' -50.3 NC_001650.1 + 31267 0.66 0.996707
Target:  5'- -aGGGACUCgagcggGGAgGgUCUGUGCGCg- -3'
miRNA:   3'- ggUCUUGAG------UCUgUgAGAUACGCGac -5'
3645 5' -50.3 NC_001650.1 + 105497 0.66 0.996707
Target:  5'- aCAGGugUgGGACACaggCUAcGCGCa- -3'
miRNA:   3'- gGUCUugAgUCUGUGa--GAUaCGCGac -5'
3645 5' -50.3 NC_001650.1 + 29964 0.66 0.99613
Target:  5'- cCCAGAguACUgGGGCGCggccgcCUGggGCGCUa -3'
miRNA:   3'- -GGUCU--UGAgUCUGUGa-----GAUa-CGCGAc -5'
3645 5' -50.3 NC_001650.1 + 148159 0.67 0.995473
Target:  5'- aCAGGGCUCgAGGCGCUgUAUGUa--- -3'
miRNA:   3'- gGUCUUGAG-UCUGUGAgAUACGcgac -5'
3645 5' -50.3 NC_001650.1 + 121877 0.67 0.995473
Target:  5'- -aGGGGCUCAaccccggcGACGCggaCUAcGCGCUGg -3'
miRNA:   3'- ggUCUUGAGU--------CUGUGa--GAUaCGCGAC- -5'
3645 5' -50.3 NC_001650.1 + 122561 0.67 0.99294
Target:  5'- gCCAGGACcugCAGAgGUUCUAUGCGg-- -3'
miRNA:   3'- -GGUCUUGa--GUCUgUGAGAUACGCgac -5'
3645 5' -50.3 NC_001650.1 + 144533 0.67 0.991881
Target:  5'- aCCAGGugcCUCAGGCACgucucgCUAcGUGCa- -3'
miRNA:   3'- -GGUCUu--GAGUCUGUGa-----GAUaCGCGac -5'
3645 5' -50.3 NC_001650.1 + 100483 0.68 0.991187
Target:  5'- cUCAGGACggcgagCAGGCGCUCgccuauccgcggggaUAUGUGCg- -3'
miRNA:   3'- -GGUCUUGa-----GUCUGUGAG---------------AUACGCGac -5'
3645 5' -50.3 NC_001650.1 + 73839 0.68 0.990699
Target:  5'- gUAGAugaaauuCUCGG-CGCUCUcgGCGUUGu -3'
miRNA:   3'- gGUCUu------GAGUCuGUGAGAuaCGCGAC- -5'
3645 5' -50.3 NC_001650.1 + 134675 0.68 0.987933
Target:  5'- cCUAGAGCUCAcGuCGCUCUGaGagGCUGa -3'
miRNA:   3'- -GGUCUUGAGU-CuGUGAGAUaCg-CGAC- -5'
3645 5' -50.3 NC_001650.1 + 59774 0.68 0.98633
Target:  5'- cCCAGGGCUC--GCACUCcugGCGCc- -3'
miRNA:   3'- -GGUCUUGAGucUGUGAGauaCGCGac -5'
3645 5' -50.3 NC_001650.1 + 82377 0.68 0.98633
Target:  5'- aUCAGAGCUCugAGACGCUCca-GC-CUGg -3'
miRNA:   3'- -GGUCUUGAG--UCUGUGAGauaCGcGAC- -5'
3645 5' -50.3 NC_001650.1 + 98493 0.69 0.975765
Target:  5'- cCCAGc-CUCAGGCGcCUCgcgAUGUGCUc -3'
miRNA:   3'- -GGUCuuGAGUCUGU-GAGa--UACGCGAc -5'
3645 5' -50.3 NC_001650.1 + 56786 0.7 0.970189
Target:  5'- cCUGGAGCUCGGGCGCUgaGUuggcccucgcgGCGCUc -3'
miRNA:   3'- -GGUCUUGAGUCUGUGAgaUA-----------CGCGAc -5'
3645 5' -50.3 NC_001650.1 + 90184 0.7 0.9564
Target:  5'- gCCAGAACUUAGu--CUCgugccgGUGCGCg- -3'
miRNA:   3'- -GGUCUUGAGUCuguGAGa-----UACGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.