Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 3646 | 3' | -54.5 | NC_001650.1 | + | 143970 | 0.66 | 0.95132 |
|
Target: 5'- uUCUUGAGGCUccucaccgaggaGGGGGCCUUguagGgGUg -3' miRNA: 3'- uAGAACUCCGG------------UCUCUGGGAaa--CgCA- -5' |
|||||||
| 3646 | 3' | -54.5 | NC_001650.1 | + | 4723 | 0.66 | 0.95132 |
|
Target: 5'- ---aUGGGGCUccGGAGGCCCUccgUGCc- -3' miRNA: 3'- uagaACUCCGG--UCUCUGGGAa--ACGca -5' |
|||||||
| 3646 | 3' | -54.5 | NC_001650.1 | + | 171430 | 0.66 | 0.95132 |
|
Target: 5'- ---aUGGGGCUccGGAGGCCCUccgUGCc- -3' miRNA: 3'- uagaACUCCGG--UCUCUGGGAa--ACGca -5' |
|||||||
| 3646 | 3' | -54.5 | NC_001650.1 | + | 59632 | 0.66 | 0.947039 |
|
Target: 5'- gGUCUcgggccaccUGAGGCUGGAGGggUCCUUcGCGg -3' miRNA: 3'- -UAGA---------ACUCCGGUCUCU--GGGAAaCGCa -5' |
|||||||
| 3646 | 3' | -54.5 | NC_001650.1 | + | 130641 | 0.67 | 0.903987 |
|
Target: 5'- ----cGAGGCCauAGAGACCCUggagGCc- -3' miRNA: 3'- uagaaCUCCGG--UCUCUGGGAaa--CGca -5' |
|||||||
| 3646 | 3' | -54.5 | NC_001650.1 | + | 158001 | 0.67 | 0.903987 |
|
Target: 5'- ----aGGGGCCAGuacauaguGGCCCUggGCGa -3' miRNA: 3'- uagaaCUCCGGUCu-------CUGGGAaaCGCa -5' |
|||||||
| 3646 | 3' | -54.5 | NC_001650.1 | + | 58395 | 0.68 | 0.896843 |
|
Target: 5'- cUCUcgGGGGCCGGGGacgcguaGCCCUccGCGa -3' miRNA: 3'- uAGAa-CUCCGGUCUC-------UGGGAaaCGCa -5' |
|||||||
| 3646 | 3' | -54.5 | NC_001650.1 | + | 49343 | 0.7 | 0.774721 |
|
Target: 5'- uUCUUGAGGUCGGAGACCacg-GUc- -3' miRNA: 3'- uAGAACUCCGGUCUCUGGgaaaCGca -5' |
|||||||
| 3646 | 3' | -54.5 | NC_001650.1 | + | 56951 | 0.73 | 0.654064 |
|
Target: 5'- uUUUUGGGGCCAGugaAGGCCCagUGUGg -3' miRNA: 3'- uAGAACUCCGGUC---UCUGGGaaACGCa -5' |
|||||||
| 3646 | 3' | -54.5 | NC_001650.1 | + | 44453 | 1.05 | 0.007289 |
|
Target: 5'- cAUCUUGAGGCCAGAGACCCUUUGCGUu -3' miRNA: 3'- -UAGAACUCCGGUCUCUGGGAAACGCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home