miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3647 5' -57.5 NC_001650.1 + 114772 0.66 0.879009
Target:  5'- uGCAGCcuggACCC-GCCGcGGACCCc--- -3'
miRNA:   3'- gUGUCGa---UGGGaCGGU-CCUGGGaugu -5'
3647 5' -57.5 NC_001650.1 + 81821 0.66 0.879009
Target:  5'- gCGCGGCgcgcGCCCUGUgCGGcGACCUcGCGu -3'
miRNA:   3'- -GUGUCGa---UGGGACG-GUC-CUGGGaUGU- -5'
3647 5' -57.5 NC_001650.1 + 120505 0.66 0.879009
Target:  5'- gCugGGCgAgCCUGuCCAGGgACgCCUGCGg -3'
miRNA:   3'- -GugUCGaUgGGAC-GGUCC-UG-GGAUGU- -5'
3647 5' -57.5 NC_001650.1 + 89269 0.66 0.876888
Target:  5'- cCGCGGUcACCC-GCCucaugggcucgaagAGGACCCUGa- -3'
miRNA:   3'- -GUGUCGaUGGGaCGG--------------UCCUGGGAUgu -5'
3647 5' -57.5 NC_001650.1 + 128910 0.66 0.871865
Target:  5'- -cCAGCaUGCCCUccacgucgGCCAGGAUgcgcucgguggCCUGCGc -3'
miRNA:   3'- guGUCG-AUGGGA--------CGGUCCUG-----------GGAUGU- -5'
3647 5' -57.5 NC_001650.1 + 59094 0.66 0.871865
Target:  5'- -uUAGCUACCCcaagGacagCAGGGCCUUAUAu -3'
miRNA:   3'- guGUCGAUGGGa---Cg---GUCCUGGGAUGU- -5'
3647 5' -57.5 NC_001650.1 + 46451 0.66 0.871865
Target:  5'- gCGCGGggGCgUgUGCCAGGAUgCCUACGu -3'
miRNA:   3'- -GUGUCgaUG-GgACGGUCCUG-GGAUGU- -5'
3647 5' -57.5 NC_001650.1 + 42470 0.66 0.871865
Target:  5'- gGCuauGCUACCCUGucauCCAGGaACCCc--- -3'
miRNA:   3'- gUGu--CGAUGGGAC----GGUCC-UGGGaugu -5'
3647 5' -57.5 NC_001650.1 + 79298 0.66 0.864511
Target:  5'- aGCGGCcgcGCCCggaGCCAGG-CCCgggGCc -3'
miRNA:   3'- gUGUCGa--UGGGa--CGGUCCuGGGa--UGu -5'
3647 5' -57.5 NC_001650.1 + 60530 0.66 0.863764
Target:  5'- uGCAGCU-CCCcGCCcuccuggGGGACCagUACAa -3'
miRNA:   3'- gUGUCGAuGGGaCGG-------UCCUGGg-AUGU- -5'
3647 5' -57.5 NC_001650.1 + 31119 0.66 0.856951
Target:  5'- cCAUAGCcGCCCUGCagaAGGACUg---- -3'
miRNA:   3'- -GUGUCGaUGGGACGg--UCCUGGgaugu -5'
3647 5' -57.5 NC_001650.1 + 138276 0.66 0.856951
Target:  5'- aAgGGUUACCugggCUGCCAGG-CCCUGu- -3'
miRNA:   3'- gUgUCGAUGG----GACGGUCCuGGGAUgu -5'
3647 5' -57.5 NC_001650.1 + 52790 0.66 0.849193
Target:  5'- gGCGGCgGCCCU--CGGGGCCCggGCGc -3'
miRNA:   3'- gUGUCGaUGGGAcgGUCCUGGGa-UGU- -5'
3647 5' -57.5 NC_001650.1 + 72271 0.66 0.841241
Target:  5'- -cCAGCcACCUUGaCCAGGGCCUg--- -3'
miRNA:   3'- guGUCGaUGGGAC-GGUCCUGGGaugu -5'
3647 5' -57.5 NC_001650.1 + 72191 0.66 0.841241
Target:  5'- gACGGCcGCCCcGcCCAGGugCUgGCAg -3'
miRNA:   3'- gUGUCGaUGGGaC-GGUCCugGGaUGU- -5'
3647 5' -57.5 NC_001650.1 + 155279 0.67 0.833104
Target:  5'- ---uGUUACCC-GCCAGGugCCUcaGCGc -3'
miRNA:   3'- guguCGAUGGGaCGGUCCugGGA--UGU- -5'
3647 5' -57.5 NC_001650.1 + 67424 0.67 0.824787
Target:  5'- --aGGCUcAUCCUGuCCGGGcacccguacGCCCUGCAc -3'
miRNA:   3'- gugUCGA-UGGGAC-GGUCC---------UGGGAUGU- -5'
3647 5' -57.5 NC_001650.1 + 68290 0.67 0.816299
Target:  5'- -cCAGCUGCUgguuCU-CCAGG-CCCUGCAg -3'
miRNA:   3'- guGUCGAUGG----GAcGGUCCuGGGAUGU- -5'
3647 5' -57.5 NC_001650.1 + 84996 0.67 0.816299
Target:  5'- gGCAGCUugGCCaCcGCguGGGCCCU-CAa -3'
miRNA:   3'- gUGUCGA--UGG-GaCGguCCUGGGAuGU- -5'
3647 5' -57.5 NC_001650.1 + 118571 0.67 0.816299
Target:  5'- gCGCAGCUcACCagcugcgagGCCAGGAUCUUAa- -3'
miRNA:   3'- -GUGUCGA-UGGga-------CGGUCCUGGGAUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.