miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3649 3' -54.7 NC_001650.1 + 35672 0.65 0.961963
Target:  5'- aGCCAgggguuCGUGGACCUccuggccGGGG--GGCUCAc -3'
miRNA:   3'- gCGGU------GUAUCUGGG-------UCCCuaUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 54403 0.66 0.954966
Target:  5'- aGCCugGgcGGCCCGGG---AGCUCc -3'
miRNA:   3'- gCGGugUauCUGGGUCCcuaUCGAGu -5'
3649 3' -54.7 NC_001650.1 + 1767 0.66 0.954966
Target:  5'- gGCCAUggAGGCCCuguGGGAgguGCcCAu -3'
miRNA:   3'- gCGGUGuaUCUGGGu--CCCUau-CGaGU- -5'
3649 3' -54.7 NC_001650.1 + 35868 0.66 0.954966
Target:  5'- gCGCCGCGggGGACCUggaguuucacgcGGGGcgGGCg-- -3'
miRNA:   3'- -GCGGUGUa-UCUGGG------------UCCCuaUCGagu -5'
3649 3' -54.7 NC_001650.1 + 78351 0.66 0.954966
Target:  5'- gGCCAUccuGACagAGGGggGGCUCAg -3'
miRNA:   3'- gCGGUGuauCUGggUCCCuaUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 168474 0.66 0.954966
Target:  5'- gGCCAUggAGGCCCuguGGGAgguGCcCAu -3'
miRNA:   3'- gCGGUGuaUCUGGGu--CCCUau-CGaGU- -5'
3649 3' -54.7 NC_001650.1 + 7772 0.66 0.954966
Target:  5'- uGCCGgGcAGACUaGGGGGU-GCUCAa -3'
miRNA:   3'- gCGGUgUaUCUGGgUCCCUAuCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 174478 0.66 0.954966
Target:  5'- uGCCGgGcAGACUaGGGGGU-GCUCAa -3'
miRNA:   3'- gCGGUgUaUCUGGgUCCCUAuCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 109145 0.66 0.954182
Target:  5'- aGCUGCucccugagguGGCCCAGGGAgaaggccAGCUCc -3'
miRNA:   3'- gCGGUGuau-------CUGGGUCCCUa------UCGAGu -5'
3649 3' -54.7 NC_001650.1 + 168177 0.66 0.950954
Target:  5'- aGCCAauggGGGCCCGGGG--GGCg-- -3'
miRNA:   3'- gCGGUgua-UCUGGGUCCCuaUCGagu -5'
3649 3' -54.7 NC_001650.1 + 1470 0.66 0.950954
Target:  5'- aGCCAauggGGGCCCGGGG--GGCg-- -3'
miRNA:   3'- gCGGUgua-UCUGGGUCCCuaUCGagu -5'
3649 3' -54.7 NC_001650.1 + 111707 0.66 0.950954
Target:  5'- gCGCgGCGgcgGGgaucaccaGCCCGGGGGUGGCc-- -3'
miRNA:   3'- -GCGgUGUa--UC--------UGGGUCCCUAUCGagu -5'
3649 3' -54.7 NC_001650.1 + 68377 0.66 0.95054
Target:  5'- cCGCCAcCAUcuccaaggugcacGGcCCCGGGcuGGUGGCUCGc -3'
miRNA:   3'- -GCGGU-GUA-------------UCuGGGUCC--CUAUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 22416 0.66 0.946709
Target:  5'- -cCCACAUGcuGGCCCAGaGGu--GCUCGg -3'
miRNA:   3'- gcGGUGUAU--CUGGGUC-CCuauCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 27845 0.66 0.946709
Target:  5'- gGCCGCGUAGG-CCAGGuGGUgcAGCg-- -3'
miRNA:   3'- gCGGUGUAUCUgGGUCC-CUA--UCGagu -5'
3649 3' -54.7 NC_001650.1 + 37199 0.66 0.946709
Target:  5'- gCGCUACAUAGAgggggugaccCCCgAGGGGcUGGCa-- -3'
miRNA:   3'- -GCGGUGUAUCU----------GGG-UCCCU-AUCGagu -5'
3649 3' -54.7 NC_001650.1 + 54808 0.66 0.94223
Target:  5'- aGCCAgGUccaaaAUCCAGGGGUAGCg-- -3'
miRNA:   3'- gCGGUgUAuc---UGGGUCCCUAUCGagu -5'
3649 3' -54.7 NC_001650.1 + 155795 0.66 0.94223
Target:  5'- cCGCCGCccgggGGACCUguagAGGGucAGCUCc -3'
miRNA:   3'- -GCGGUGua---UCUGGG----UCCCuaUCGAGu -5'
3649 3' -54.7 NC_001650.1 + 141880 0.66 0.941305
Target:  5'- cCGCCGCAcggagggccucgGGGCCUGGGGGUGuuuuGCUUc -3'
miRNA:   3'- -GCGGUGUa-----------UCUGGGUCCCUAU----CGAGu -5'
3649 3' -54.7 NC_001650.1 + 155102 0.66 0.94084
Target:  5'- cCGCCAcCGUGGAgacggccgugggguUgCGGGGGUAGUUCc -3'
miRNA:   3'- -GCGGU-GUAUCU--------------GgGUCCCUAUCGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.