miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3649 3' -54.7 NC_001650.1 + 47741 1.09 0.004261
Target:  5'- gCGCCACAUAGACCCAGGGAUAGCUCAg -3'
miRNA:   3'- -GCGGUGUAUCUGGGUCCCUAUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 152526 0.76 0.458902
Target:  5'- aGCCACcacgcaaaAGACCCAGGGAUGGUa-- -3'
miRNA:   3'- gCGGUGua------UCUGGGUCCCUAUCGagu -5'
3649 3' -54.7 NC_001650.1 + 49497 0.75 0.526066
Target:  5'- gGCCAgCuccAGGCCCGGGGGcAGCUCGu -3'
miRNA:   3'- gCGGU-Gua-UCUGGGUCCCUaUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 165116 0.74 0.617085
Target:  5'- gGCCGCGgugGGGCCCGGGGGguggggUGGCg-- -3'
miRNA:   3'- gCGGUGUa--UCUGGGUCCCU------AUCGagu -5'
3649 3' -54.7 NC_001650.1 + 80698 0.74 0.617085
Target:  5'- gGCUACAcGGACCCGGGGAgcgacGGCg-- -3'
miRNA:   3'- gCGGUGUaUCUGGGUCCCUa----UCGagu -5'
3649 3' -54.7 NC_001650.1 + 163603 0.73 0.636592
Target:  5'- cCGCCGCuGUuuggaaaauuagcAGGCUCGGGGAUGGaCUCAu -3'
miRNA:   3'- -GCGGUG-UA-------------UCUGGGUCCCUAUC-GAGU- -5'
3649 3' -54.7 NC_001650.1 + 21542 0.73 0.646857
Target:  5'- gGCCGCggcugcgGUGGACCCGGGGGUcGcCUCc -3'
miRNA:   3'- gCGGUG-------UAUCUGGGUCCCUAuC-GAGu -5'
3649 3' -54.7 NC_001650.1 + 167992 0.72 0.678567
Target:  5'- aGCCAauggGGGCCCGGGGGUGGgCcCAa -3'
miRNA:   3'- gCGGUgua-UCUGGGUCCCUAUC-GaGU- -5'
3649 3' -54.7 NC_001650.1 + 1285 0.72 0.678567
Target:  5'- aGCCAauggGGGCCCGGGGGUGGgCcCAa -3'
miRNA:   3'- gCGGUgua-UCUGGGUCCCUAUC-GaGU- -5'
3649 3' -54.7 NC_001650.1 + 52620 0.72 0.728817
Target:  5'- gGCCACu--GGCCCGGGGGUc-CUCGg -3'
miRNA:   3'- gCGGUGuauCUGGGUCCCUAucGAGU- -5'
3649 3' -54.7 NC_001650.1 + 132350 0.71 0.748393
Target:  5'- gGCCuCGgugGGGCCCAGGGuguaGUAGCUg- -3'
miRNA:   3'- gCGGuGUa--UCUGGGUCCC----UAUCGAgu -5'
3649 3' -54.7 NC_001650.1 + 56758 0.71 0.758031
Target:  5'- gGCCccaaaaaacacaACAUAGuauuCCCGGGGGUAGCg-- -3'
miRNA:   3'- gCGG------------UGUAUCu---GGGUCCCUAUCGagu -5'
3649 3' -54.7 NC_001650.1 + 45118 0.71 0.758031
Target:  5'- gGCCGCGguu-CCCAGGGA--GCUCGc -3'
miRNA:   3'- gCGGUGUaucuGGGUCCCUauCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 101682 0.71 0.767558
Target:  5'- -aUCACGUucuGGACCCGGcacggcGGGUAGCUCAg -3'
miRNA:   3'- gcGGUGUA---UCUGGGUC------CCUAUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 54207 0.71 0.776963
Target:  5'- gGCCGCccAGGCUCAGGGuuacaGGCUCc -3'
miRNA:   3'- gCGGUGuaUCUGGGUCCCua---UCGAGu -5'
3649 3' -54.7 NC_001650.1 + 61346 0.7 0.795373
Target:  5'- gGCgGCGggGGACCCGGGGGcGGCg-- -3'
miRNA:   3'- gCGgUGUa-UCUGGGUCCCUaUCGagu -5'
3649 3' -54.7 NC_001650.1 + 90903 0.7 0.813189
Target:  5'- -uUCACGUAG-UCCAGGGucUGGCUCAc -3'
miRNA:   3'- gcGGUGUAUCuGGGUCCCu-AUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 132854 0.7 0.821853
Target:  5'- cCGCCACucUGGACUUGGGGAUGGg--- -3'
miRNA:   3'- -GCGGUGu-AUCUGGGUCCCUAUCgagu -5'
3649 3' -54.7 NC_001650.1 + 28358 0.7 0.830344
Target:  5'- -cCCGCGgugGGggucucGCCCGGGGAgUGGCUCAa -3'
miRNA:   3'- gcGGUGUa--UC------UGGGUCCCU-AUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 143284 0.7 0.830344
Target:  5'- uGCCcugACAUccuguucggGGAgCCCGGGGAggaggAGCUCAg -3'
miRNA:   3'- gCGG---UGUA---------UCU-GGGUCCCUa----UCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.