Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3649 | 3' | -54.7 | NC_001650.1 | + | 28358 | 0.7 | 0.830344 |
Target: 5'- -cCCGCGgugGGggucucGCCCGGGGAgUGGCUCAa -3' miRNA: 3'- gcGGUGUa--UC------UGGGUCCCU-AUCGAGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 145708 | 0.69 | 0.838653 |
Target: 5'- cCGCCACGUAGAacuggcaCAGGaGGUGGCa-- -3' miRNA: 3'- -GCGGUGUAUCUgg-----GUCC-CUAUCGagu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 152709 | 0.69 | 0.838653 |
Target: 5'- gGCCACccaaaaaACCCAGGGAUGGUg-- -3' miRNA: 3'- gCGGUGuauc---UGGGUCCCUAUCGagu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 6510 | 0.69 | 0.862419 |
Target: 5'- gGCC-CAauagGGACCCAGGGggAGUUg- -3' miRNA: 3'- gCGGuGUa---UCUGGGUCCCuaUCGAgu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 173217 | 0.69 | 0.862419 |
Target: 5'- gGCC-CAauagGGACCCAGGGggAGUUg- -3' miRNA: 3'- gCGGuGUa---UCUGGGUCCCuaUCGAgu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 134100 | 0.68 | 0.877228 |
Target: 5'- gCGCCGCGgu--CCCAGGGGcGGcCUCu -3' miRNA: 3'- -GCGGUGUaucuGGGUCCCUaUC-GAGu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 164840 | 0.68 | 0.884305 |
Target: 5'- uGCCGCGc-GGCCCGGGGcgGcguuccGCUCGg -3' miRNA: 3'- gCGGUGUauCUGGGUCCCuaU------CGAGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 51019 | 0.68 | 0.895159 |
Target: 5'- gGCCGCGgugcccgagaagaAGACCUGGGGcu-GCUCAg -3' miRNA: 3'- gCGGUGUa------------UCUGGGUCCCuauCGAGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 152619 | 0.68 | 0.897781 |
Target: 5'- aGCCACcacacaaaAGACCCAGGGAUGa---- -3' miRNA: 3'- gCGGUGua------UCUGGGUCCCUAUcgagu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 77037 | 0.68 | 0.897781 |
Target: 5'- gGCCGCGcUGGGCCuCGGGGG-AGCcCGu -3' miRNA: 3'- gCGGUGU-AUCUGG-GUCCCUaUCGaGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 62851 | 0.68 | 0.904171 |
Target: 5'- uGCCcCAgGGGCUCGGGGcugGGCUCc -3' miRNA: 3'- gCGGuGUaUCUGGGUCCCua-UCGAGu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 49188 | 0.68 | 0.904171 |
Target: 5'- gGCCGCGcgcuGGCCgAGGGcgAGCUg- -3' miRNA: 3'- gCGGUGUau--CUGGgUCCCuaUCGAgu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 127975 | 0.68 | 0.910327 |
Target: 5'- cCGCCAUcuacacccAGACCCGcGGGAUAGUg-- -3' miRNA: 3'- -GCGGUGua------UCUGGGU-CCCUAUCGagu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 80308 | 0.67 | 0.91508 |
Target: 5'- gGCCACAUAGAUCUugagguAGGGcgaggaguuggGGCUCu -3' miRNA: 3'- gCGGUGUAUCUGGG------UCCCua---------UCGAGu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 31308 | 0.67 | 0.916244 |
Target: 5'- gCGCUuCAUGcGAcCCCAGGGAcguGCUCu -3' miRNA: 3'- -GCGGuGUAU-CU-GGGUCCCUau-CGAGu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 56227 | 0.67 | 0.921922 |
Target: 5'- gGCCGCGaacgAGucCCCGGGGAgauaggcGCUCGc -3' miRNA: 3'- gCGGUGUa---UCu-GGGUCCCUau-----CGAGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 157003 | 0.67 | 0.921922 |
Target: 5'- gGCCACGUccuGGCCUgcGGGGAacagGGCUaCAa -3' miRNA: 3'- gCGGUGUAu--CUGGG--UCCCUa---UCGA-GU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 105819 | 0.67 | 0.927359 |
Target: 5'- gGCCugAUAGAUCCGGGcuacaggggugaGAUAaagcugaucguGCUCAa -3' miRNA: 3'- gCGGugUAUCUGGGUCC------------CUAU-----------CGAGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 73904 | 0.67 | 0.932047 |
Target: 5'- aGCUGCG-AGGCCCAGGGGUugaccguGGCc-- -3' miRNA: 3'- gCGGUGUaUCUGGGUCCCUA-------UCGagu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 81193 | 0.67 | 0.932556 |
Target: 5'- gGCCACGUAG-CCCAcGuGGAU-GUUCu -3' miRNA: 3'- gCGGUGUAUCuGGGU-C-CCUAuCGAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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