miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3649 3' -54.7 NC_001650.1 + 1285 0.72 0.678567
Target:  5'- aGCCAauggGGGCCCGGGGGUGGgCcCAa -3'
miRNA:   3'- gCGGUgua-UCUGGGUCCCUAUC-GaGU- -5'
3649 3' -54.7 NC_001650.1 + 1470 0.66 0.950954
Target:  5'- aGCCAauggGGGCCCGGGG--GGCg-- -3'
miRNA:   3'- gCGGUgua-UCUGGGUCCCuaUCGagu -5'
3649 3' -54.7 NC_001650.1 + 1767 0.66 0.954966
Target:  5'- gGCCAUggAGGCCCuguGGGAgguGCcCAu -3'
miRNA:   3'- gCGGUGuaUCUGGGu--CCCUau-CGaGU- -5'
3649 3' -54.7 NC_001650.1 + 6510 0.69 0.862419
Target:  5'- gGCC-CAauagGGACCCAGGGggAGUUg- -3'
miRNA:   3'- gCGGuGUa---UCUGGGUCCCuaUCGAgu -5'
3649 3' -54.7 NC_001650.1 + 6958 0.67 0.937512
Target:  5'- uGCCAgGcAGACUaGGGGGU-GCUCAc -3'
miRNA:   3'- gCGGUgUaUCUGGgUCCCUAuCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 7772 0.66 0.954966
Target:  5'- uGCCGgGcAGACUaGGGGGU-GCUCAa -3'
miRNA:   3'- gCGGUgUaUCUGGgUCCCUAuCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 21542 0.73 0.646857
Target:  5'- gGCCGCggcugcgGUGGACCCGGGGGUcGcCUCc -3'
miRNA:   3'- gCGGUG-------UAUCUGGGUCCCUAuC-GAGu -5'
3649 3' -54.7 NC_001650.1 + 22416 0.66 0.946709
Target:  5'- -cCCACAUGcuGGCCCAGaGGu--GCUCGg -3'
miRNA:   3'- gcGGUGUAU--CUGGGUC-CCuauCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 27845 0.66 0.946709
Target:  5'- gGCCGCGUAGG-CCAGGuGGUgcAGCg-- -3'
miRNA:   3'- gCGGUGUAUCUgGGUCC-CUA--UCGagu -5'
3649 3' -54.7 NC_001650.1 + 28358 0.7 0.830344
Target:  5'- -cCCGCGgugGGggucucGCCCGGGGAgUGGCUCAa -3'
miRNA:   3'- gcGGUGUa--UC------UGGGUCCCU-AUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 31308 0.67 0.916244
Target:  5'- gCGCUuCAUGcGAcCCCAGGGAcguGCUCu -3'
miRNA:   3'- -GCGGuGUAU-CU-GGGUCCCUau-CGAGu -5'
3649 3' -54.7 NC_001650.1 + 35672 0.65 0.961963
Target:  5'- aGCCAgggguuCGUGGACCUccuggccGGGG--GGCUCAc -3'
miRNA:   3'- gCGGU------GUAUCUGGG-------UCCCuaUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 35868 0.66 0.954966
Target:  5'- gCGCCGCGggGGACCUggaguuucacgcGGGGcgGGCg-- -3'
miRNA:   3'- -GCGGUGUa-UCUGGG------------UCCCuaUCGagu -5'
3649 3' -54.7 NC_001650.1 + 37199 0.66 0.946709
Target:  5'- gCGCUACAUAGAgggggugaccCCCgAGGGGcUGGCa-- -3'
miRNA:   3'- -GCGGUGUAUCU----------GGG-UCCCU-AUCGagu -5'
3649 3' -54.7 NC_001650.1 + 45118 0.71 0.758031
Target:  5'- gGCCGCGguu-CCCAGGGA--GCUCGc -3'
miRNA:   3'- gCGGUGUaucuGGGUCCCUauCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 47741 1.09 0.004261
Target:  5'- gCGCCACAUAGACCCAGGGAUAGCUCAg -3'
miRNA:   3'- -GCGGUGUAUCUGGGUCCCUAUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 49188 0.68 0.904171
Target:  5'- gGCCGCGcgcuGGCCgAGGGcgAGCUg- -3'
miRNA:   3'- gCGGUGUau--CUGGgUCCCuaUCGAgu -5'
3649 3' -54.7 NC_001650.1 + 49497 0.75 0.526066
Target:  5'- gGCCAgCuccAGGCCCGGGGGcAGCUCGu -3'
miRNA:   3'- gCGGU-Gua-UCUGGGUCCCUaUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 51019 0.68 0.895159
Target:  5'- gGCCGCGgugcccgagaagaAGACCUGGGGcu-GCUCAg -3'
miRNA:   3'- gCGGUGUa------------UCUGGGUCCCuauCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 52620 0.72 0.728817
Target:  5'- gGCCACu--GGCCCGGGGGUc-CUCGg -3'
miRNA:   3'- gCGGUGuauCUGGGUCCCUAucGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.