Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3649 | 3' | -54.7 | NC_001650.1 | + | 116368 | 0.67 | 0.932556 |
Target: 5'- aGCCACGcucAGGgUCAGGG--GGCUCAu -3' miRNA: 3'- gCGGUGUa--UCUgGGUCCCuaUCGAGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 127975 | 0.68 | 0.910327 |
Target: 5'- cCGCCAUcuacacccAGACCCGcGGGAUAGUg-- -3' miRNA: 3'- -GCGGUGua------UCUGGGU-CCCUAUCGagu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 132350 | 0.71 | 0.748393 |
Target: 5'- gGCCuCGgugGGGCCCAGGGuguaGUAGCUg- -3' miRNA: 3'- gCGGuGUa--UCUGGGUCCC----UAUCGAgu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 132854 | 0.7 | 0.821853 |
Target: 5'- cCGCCACucUGGACUUGGGGAUGGg--- -3' miRNA: 3'- -GCGGUGu-AUCUGGGUCCCUAUCgagu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 133141 | 0.7 | 0.830344 |
Target: 5'- gCGCCGCGgggGGACCCucGGGcggcuGUAGuCUCGc -3' miRNA: 3'- -GCGGUGUa--UCUGGGu-CCC-----UAUC-GAGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 134100 | 0.68 | 0.877228 |
Target: 5'- gCGCCGCGgu--CCCAGGGGcGGcCUCu -3' miRNA: 3'- -GCGGUGUaucuGGGUCCCUaUC-GAGu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 141880 | 0.66 | 0.941305 |
Target: 5'- cCGCCGCAcggagggccucgGGGCCUGGGGGUGuuuuGCUUc -3' miRNA: 3'- -GCGGUGUa-----------UCUGGGUCCCUAU----CGAGu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 143284 | 0.7 | 0.830344 |
Target: 5'- uGCCcugACAUccuguucggGGAgCCCGGGGAggaggAGCUCAg -3' miRNA: 3'- gCGG---UGUA---------UCU-GGGUCCCUa----UCGAGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 145708 | 0.69 | 0.838653 |
Target: 5'- cCGCCACGUAGAacuggcaCAGGaGGUGGCa-- -3' miRNA: 3'- -GCGGUGUAUCUgg-----GUCC-CUAUCGagu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 149709 | 0.66 | 0.940371 |
Target: 5'- gGCCGCucucuggagauGAUUCAGGGGUAGCg-- -3' miRNA: 3'- gCGGUGuau--------CUGGGUCCCUAUCGagu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 152526 | 0.76 | 0.458902 |
Target: 5'- aGCCACcacgcaaaAGACCCAGGGAUGGUa-- -3' miRNA: 3'- gCGGUGua------UCUGGGUCCCUAUCGagu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 152619 | 0.68 | 0.897781 |
Target: 5'- aGCCACcacacaaaAGACCCAGGGAUGa---- -3' miRNA: 3'- gCGGUGua------UCUGGGUCCCUAUcgagu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 152709 | 0.69 | 0.838653 |
Target: 5'- gGCCACccaaaaaACCCAGGGAUGGUg-- -3' miRNA: 3'- gCGGUGuauc---UGGGUCCCUAUCGagu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 155102 | 0.66 | 0.94084 |
Target: 5'- cCGCCAcCGUGGAgacggccgugggguUgCGGGGGUAGUUCc -3' miRNA: 3'- -GCGGU-GUAUCU--------------GgGUCCCUAUCGAGu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 155795 | 0.66 | 0.94223 |
Target: 5'- cCGCCGCccgggGGACCUguagAGGGucAGCUCc -3' miRNA: 3'- -GCGGUGua---UCUGGG----UCCCuaUCGAGu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 157003 | 0.67 | 0.921922 |
Target: 5'- gGCCACGUccuGGCCUgcGGGGAacagGGCUaCAa -3' miRNA: 3'- gCGGUGUAu--CUGGG--UCCCUa---UCGA-GU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 158864 | 0.67 | 0.936051 |
Target: 5'- aGCCACcUGGACCCccguagccgccuggAGGGAggggGGgaCAg -3' miRNA: 3'- gCGGUGuAUCUGGG--------------UCCCUa---UCgaGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 163603 | 0.73 | 0.636592 |
Target: 5'- cCGCCGCuGUuuggaaaauuagcAGGCUCGGGGAUGGaCUCAu -3' miRNA: 3'- -GCGGUG-UA-------------UCUGGGUCCCUAUC-GAGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 164840 | 0.68 | 0.884305 |
Target: 5'- uGCCGCGc-GGCCCGGGGcgGcguuccGCUCGg -3' miRNA: 3'- gCGGUGUauCUGGGUCCCuaU------CGAGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 165116 | 0.74 | 0.617085 |
Target: 5'- gGCCGCGgugGGGCCCGGGGGguggggUGGCg-- -3' miRNA: 3'- gCGGUGUa--UCUGGGUCCCU------AUCGagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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