miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3649 3' -54.7 NC_001650.1 + 134100 0.68 0.877228
Target:  5'- gCGCCGCGgu--CCCAGGGGcGGcCUCu -3'
miRNA:   3'- -GCGGUGUaucuGGGUCCCUaUC-GAGu -5'
3649 3' -54.7 NC_001650.1 + 133141 0.7 0.830344
Target:  5'- gCGCCGCGgggGGACCCucGGGcggcuGUAGuCUCGc -3'
miRNA:   3'- -GCGGUGUa--UCUGGGu-CCC-----UAUC-GAGU- -5'
3649 3' -54.7 NC_001650.1 + 132854 0.7 0.821853
Target:  5'- cCGCCACucUGGACUUGGGGAUGGg--- -3'
miRNA:   3'- -GCGGUGu-AUCUGGGUCCCUAUCgagu -5'
3649 3' -54.7 NC_001650.1 + 132350 0.71 0.748393
Target:  5'- gGCCuCGgugGGGCCCAGGGuguaGUAGCUg- -3'
miRNA:   3'- gCGGuGUa--UCUGGGUCCC----UAUCGAgu -5'
3649 3' -54.7 NC_001650.1 + 127975 0.68 0.910327
Target:  5'- cCGCCAUcuacacccAGACCCGcGGGAUAGUg-- -3'
miRNA:   3'- -GCGGUGua------UCUGGGU-CCCUAUCGagu -5'
3649 3' -54.7 NC_001650.1 + 116368 0.67 0.932556
Target:  5'- aGCCACGcucAGGgUCAGGG--GGCUCAu -3'
miRNA:   3'- gCGGUGUa--UCUgGGUCCCuaUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 111707 0.66 0.950954
Target:  5'- gCGCgGCGgcgGGgaucaccaGCCCGGGGGUGGCc-- -3'
miRNA:   3'- -GCGgUGUa--UC--------UGGGUCCCUAUCGagu -5'
3649 3' -54.7 NC_001650.1 + 109145 0.66 0.954182
Target:  5'- aGCUGCucccugagguGGCCCAGGGAgaaggccAGCUCc -3'
miRNA:   3'- gCGGUGuau-------CUGGGUCCCUa------UCGAGu -5'
3649 3' -54.7 NC_001650.1 + 105819 0.67 0.927359
Target:  5'- gGCCugAUAGAUCCGGGcuacaggggugaGAUAaagcugaucguGCUCAa -3'
miRNA:   3'- gCGGugUAUCUGGGUCC------------CUAU-----------CGAGU- -5'
3649 3' -54.7 NC_001650.1 + 101682 0.71 0.767558
Target:  5'- -aUCACGUucuGGACCCGGcacggcGGGUAGCUCAg -3'
miRNA:   3'- gcGGUGUA---UCUGGGUC------CCUAUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 90903 0.7 0.813189
Target:  5'- -uUCACGUAG-UCCAGGGucUGGCUCAc -3'
miRNA:   3'- gcGGUGUAUCuGGGUCCCu-AUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 81193 0.67 0.932556
Target:  5'- gGCCACGUAG-CCCAcGuGGAU-GUUCu -3'
miRNA:   3'- gCGGUGUAUCuGGGU-C-CCUAuCGAGu -5'
3649 3' -54.7 NC_001650.1 + 80698 0.74 0.617085
Target:  5'- gGCUACAcGGACCCGGGGAgcgacGGCg-- -3'
miRNA:   3'- gCGGUGUaUCUGGGUCCCUa----UCGagu -5'
3649 3' -54.7 NC_001650.1 + 80308 0.67 0.91508
Target:  5'- gGCCACAUAGAUCUugagguAGGGcgaggaguuggGGCUCu -3'
miRNA:   3'- gCGGUGUAUCUGGG------UCCCua---------UCGAGu -5'
3649 3' -54.7 NC_001650.1 + 78351 0.66 0.954966
Target:  5'- gGCCAUccuGACagAGGGggGGCUCAg -3'
miRNA:   3'- gCGGUGuauCUGggUCCCuaUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 77037 0.68 0.897781
Target:  5'- gGCCGCGcUGGGCCuCGGGGG-AGCcCGu -3'
miRNA:   3'- gCGGUGU-AUCUGG-GUCCCUaUCGaGU- -5'
3649 3' -54.7 NC_001650.1 + 73904 0.67 0.932047
Target:  5'- aGCUGCG-AGGCCCAGGGGUugaccguGGCc-- -3'
miRNA:   3'- gCGGUGUaUCUGGGUCCCUA-------UCGagu -5'
3649 3' -54.7 NC_001650.1 + 68377 0.66 0.95054
Target:  5'- cCGCCAcCAUcuccaaggugcacGGcCCCGGGcuGGUGGCUCGc -3'
miRNA:   3'- -GCGGU-GUA-------------UCuGGGUCC--CUAUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 66866 0.67 0.937512
Target:  5'- gGCCGCGggAGGCgCCGGGGGcgggGGCg-- -3'
miRNA:   3'- gCGGUGUa-UCUG-GGUCCCUa---UCGagu -5'
3649 3' -54.7 NC_001650.1 + 62851 0.68 0.904171
Target:  5'- uGCCcCAgGGGCUCGGGGcugGGCUCc -3'
miRNA:   3'- gCGGuGUaUCUGGGUCCCua-UCGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.