Results 61 - 66 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3649 | 3' | -54.7 | NC_001650.1 | + | 7772 | 0.66 | 0.954966 |
Target: 5'- uGCCGgGcAGACUaGGGGGU-GCUCAa -3' miRNA: 3'- gCGGUgUaUCUGGgUCCCUAuCGAGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 6958 | 0.67 | 0.937512 |
Target: 5'- uGCCAgGcAGACUaGGGGGU-GCUCAc -3' miRNA: 3'- gCGGUgUaUCUGGgUCCCUAuCGAGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 6510 | 0.69 | 0.862419 |
Target: 5'- gGCC-CAauagGGACCCAGGGggAGUUg- -3' miRNA: 3'- gCGGuGUa---UCUGGGUCCCuaUCGAgu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 1767 | 0.66 | 0.954966 |
Target: 5'- gGCCAUggAGGCCCuguGGGAgguGCcCAu -3' miRNA: 3'- gCGGUGuaUCUGGGu--CCCUau-CGaGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 1470 | 0.66 | 0.950954 |
Target: 5'- aGCCAauggGGGCCCGGGG--GGCg-- -3' miRNA: 3'- gCGGUgua-UCUGGGUCCCuaUCGagu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 1285 | 0.72 | 0.678567 |
Target: 5'- aGCCAauggGGGCCCGGGGGUGGgCcCAa -3' miRNA: 3'- gCGGUgua-UCUGGGUCCCUAUC-GaGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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