miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3649 3' -54.7 NC_001650.1 + 155795 0.66 0.94223
Target:  5'- cCGCCGCccgggGGACCUguagAGGGucAGCUCc -3'
miRNA:   3'- -GCGGUGua---UCUGGG----UCCCuaUCGAGu -5'
3649 3' -54.7 NC_001650.1 + 127975 0.68 0.910327
Target:  5'- cCGCCAUcuacacccAGACCCGcGGGAUAGUg-- -3'
miRNA:   3'- -GCGGUGua------UCUGGGU-CCCUAUCGagu -5'
3649 3' -54.7 NC_001650.1 + 31308 0.67 0.916244
Target:  5'- gCGCUuCAUGcGAcCCCAGGGAcguGCUCu -3'
miRNA:   3'- -GCGGuGUAU-CU-GGGUCCCUau-CGAGu -5'
3649 3' -54.7 NC_001650.1 + 56227 0.67 0.921922
Target:  5'- gGCCGCGaacgAGucCCCGGGGAgauaggcGCUCGc -3'
miRNA:   3'- gCGGUGUa---UCu-GGGUCCCUau-----CGAGU- -5'
3649 3' -54.7 NC_001650.1 + 105819 0.67 0.927359
Target:  5'- gGCCugAUAGAUCCGGGcuacaggggugaGAUAaagcugaucguGCUCAa -3'
miRNA:   3'- gCGGugUAUCUGGGUCC------------CUAU-----------CGAGU- -5'
3649 3' -54.7 NC_001650.1 + 81193 0.67 0.932556
Target:  5'- gGCCACGUAG-CCCAcGuGGAU-GUUCu -3'
miRNA:   3'- gCGGUGUAUCuGGGU-C-CCUAuCGAGu -5'
3649 3' -54.7 NC_001650.1 + 66866 0.67 0.937512
Target:  5'- gGCCGCGggAGGCgCCGGGGGcgggGGCg-- -3'
miRNA:   3'- gCGGUGUa-UCUG-GGUCCCUa---UCGagu -5'
3649 3' -54.7 NC_001650.1 + 149709 0.66 0.940371
Target:  5'- gGCCGCucucuggagauGAUUCAGGGGUAGCg-- -3'
miRNA:   3'- gCGGUGuau--------CUGGGUCCCUAUCGagu -5'
3649 3' -54.7 NC_001650.1 + 155102 0.66 0.94084
Target:  5'- cCGCCAcCGUGGAgacggccgugggguUgCGGGGGUAGUUCc -3'
miRNA:   3'- -GCGGU-GUAUCU--------------GgGUCCCUAUCGAGu -5'
3649 3' -54.7 NC_001650.1 + 49188 0.68 0.904171
Target:  5'- gGCCGCGcgcuGGCCgAGGGcgAGCUg- -3'
miRNA:   3'- gCGGUGUau--CUGGgUCCCuaUCGAgu -5'
3649 3' -54.7 NC_001650.1 + 77037 0.68 0.897781
Target:  5'- gGCCGCGcUGGGCCuCGGGGG-AGCcCGu -3'
miRNA:   3'- gCGGUGU-AUCUGG-GUCCCUaUCGaGU- -5'
3649 3' -54.7 NC_001650.1 + 145708 0.69 0.838653
Target:  5'- cCGCCACGUAGAacuggcaCAGGaGGUGGCa-- -3'
miRNA:   3'- -GCGGUGUAUCUgg-----GUCC-CUAUCGagu -5'
3649 3' -54.7 NC_001650.1 + 21542 0.73 0.646857
Target:  5'- gGCCGCggcugcgGUGGACCCGGGGGUcGcCUCc -3'
miRNA:   3'- gCGGUG-------UAUCUGGGUCCCUAuC-GAGu -5'
3649 3' -54.7 NC_001650.1 + 52620 0.72 0.728817
Target:  5'- gGCCACu--GGCCCGGGGGUc-CUCGg -3'
miRNA:   3'- gCGGUGuauCUGGGUCCCUAucGAGU- -5'
3649 3' -54.7 NC_001650.1 + 56758 0.71 0.758031
Target:  5'- gGCCccaaaaaacacaACAUAGuauuCCCGGGGGUAGCg-- -3'
miRNA:   3'- gCGG------------UGUAUCu---GGGUCCCUAUCGagu -5'
3649 3' -54.7 NC_001650.1 + 45118 0.71 0.758031
Target:  5'- gGCCGCGguu-CCCAGGGA--GCUCGc -3'
miRNA:   3'- gCGGUGUaucuGGGUCCCUauCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 54207 0.71 0.776963
Target:  5'- gGCCGCccAGGCUCAGGGuuacaGGCUCc -3'
miRNA:   3'- gCGGUGuaUCUGGGUCCCua---UCGAGu -5'
3649 3' -54.7 NC_001650.1 + 90903 0.7 0.813189
Target:  5'- -uUCACGUAG-UCCAGGGucUGGCUCAc -3'
miRNA:   3'- gcGGUGUAUCuGGGUCCCu-AUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 143284 0.7 0.830344
Target:  5'- uGCCcugACAUccuguucggGGAgCCCGGGGAggaggAGCUCAg -3'
miRNA:   3'- gCGG---UGUA---------UCU-GGGUCCCUa----UCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 28358 0.7 0.830344
Target:  5'- -cCCGCGgugGGggucucGCCCGGGGAgUGGCUCAa -3'
miRNA:   3'- gcGGUGUa--UC------UGGGUCCCU-AUCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.