Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3649 | 3' | -54.7 | NC_001650.1 | + | 54207 | 0.71 | 0.776963 |
Target: 5'- gGCCGCccAGGCUCAGGGuuacaGGCUCc -3' miRNA: 3'- gCGGUGuaUCUGGGUCCCua---UCGAGu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 90903 | 0.7 | 0.813189 |
Target: 5'- -uUCACGUAG-UCCAGGGucUGGCUCAc -3' miRNA: 3'- gcGGUGUAUCuGGGUCCCu-AUCGAGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 143284 | 0.7 | 0.830344 |
Target: 5'- uGCCcugACAUccuguucggGGAgCCCGGGGAggaggAGCUCAg -3' miRNA: 3'- gCGG---UGUA---------UCU-GGGUCCCUa----UCGAGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 28358 | 0.7 | 0.830344 |
Target: 5'- -cCCGCGgugGGggucucGCCCGGGGAgUGGCUCAa -3' miRNA: 3'- gcGGUGUa--UC------UGGGUCCCU-AUCGAGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 145708 | 0.69 | 0.838653 |
Target: 5'- cCGCCACGUAGAacuggcaCAGGaGGUGGCa-- -3' miRNA: 3'- -GCGGUGUAUCUgg-----GUCC-CUAUCGagu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 77037 | 0.68 | 0.897781 |
Target: 5'- gGCCGCGcUGGGCCuCGGGGG-AGCcCGu -3' miRNA: 3'- gCGGUGU-AUCUGG-GUCCCUaUCGaGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 49188 | 0.68 | 0.904171 |
Target: 5'- gGCCGCGcgcuGGCCgAGGGcgAGCUg- -3' miRNA: 3'- gCGGUGUau--CUGGgUCCCuaUCGAgu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 127975 | 0.68 | 0.910327 |
Target: 5'- cCGCCAUcuacacccAGACCCGcGGGAUAGUg-- -3' miRNA: 3'- -GCGGUGua------UCUGGGU-CCCUAUCGagu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 132350 | 0.71 | 0.748393 |
Target: 5'- gGCCuCGgugGGGCCCAGGGuguaGUAGCUg- -3' miRNA: 3'- gCGGuGUa--UCUGGGUCCC----UAUCGAgu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 101682 | 0.71 | 0.767558 |
Target: 5'- -aUCACGUucuGGACCCGGcacggcGGGUAGCUCAg -3' miRNA: 3'- gcGGUGUA---UCUGGGUC------CCUAUCGAGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 61346 | 0.7 | 0.795373 |
Target: 5'- gGCgGCGggGGACCCGGGGGcGGCg-- -3' miRNA: 3'- gCGgUGUa-UCUGGGUCCCUaUCGagu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 132854 | 0.7 | 0.821853 |
Target: 5'- cCGCCACucUGGACUUGGGGAUGGg--- -3' miRNA: 3'- -GCGGUGu-AUCUGGGUCCCUAUCgagu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 133141 | 0.7 | 0.830344 |
Target: 5'- gCGCCGCGgggGGACCCucGGGcggcuGUAGuCUCGc -3' miRNA: 3'- -GCGGUGUa--UCUGGGu-CCC-----UAUC-GAGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 1285 | 0.72 | 0.678567 |
Target: 5'- aGCCAauggGGGCCCGGGGGUGGgCcCAa -3' miRNA: 3'- gCGGUgua-UCUGGGUCCCUAUC-GaGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 167992 | 0.72 | 0.678567 |
Target: 5'- aGCCAauggGGGCCCGGGGGUGGgCcCAa -3' miRNA: 3'- gCGGUgua-UCUGGGUCCCUAUC-GaGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 163603 | 0.73 | 0.636592 |
Target: 5'- cCGCCGCuGUuuggaaaauuagcAGGCUCGGGGAUGGaCUCAu -3' miRNA: 3'- -GCGGUG-UA-------------UCUGGGUCCCUAUC-GAGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 165116 | 0.74 | 0.617085 |
Target: 5'- gGCCGCGgugGGGCCCGGGGGguggggUGGCg-- -3' miRNA: 3'- gCGGUGUa--UCUGGGUCCCU------AUCGagu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 49497 | 0.75 | 0.526066 |
Target: 5'- gGCCAgCuccAGGCCCGGGGGcAGCUCGu -3' miRNA: 3'- gCGGU-Gua-UCUGGGUCCCUaUCGAGU- -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 152526 | 0.76 | 0.458902 |
Target: 5'- aGCCACcacgcaaaAGACCCAGGGAUGGUa-- -3' miRNA: 3'- gCGGUGua------UCUGGGUCCCUAUCGagu -5' |
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3649 | 3' | -54.7 | NC_001650.1 | + | 7772 | 0.66 | 0.954966 |
Target: 5'- uGCCGgGcAGACUaGGGGGU-GCUCAa -3' miRNA: 3'- gCGGUgUaUCUGGgUCCCUAuCGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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