miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3649 3' -54.7 NC_001650.1 + 47741 1.09 0.004261
Target:  5'- gCGCCACAUAGACCCAGGGAUAGCUCAg -3'
miRNA:   3'- -GCGGUGUAUCUGGGUCCCUAUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 51019 0.68 0.895159
Target:  5'- gGCCGCGgugcccgagaagaAGACCUGGGGcu-GCUCAg -3'
miRNA:   3'- gCGGUGUa------------UCUGGGUCCCuauCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 62851 0.68 0.904171
Target:  5'- uGCCcCAgGGGCUCGGGGcugGGCUCc -3'
miRNA:   3'- gCGGuGUaUCUGGGUCCCua-UCGAGu -5'
3649 3' -54.7 NC_001650.1 + 7772 0.66 0.954966
Target:  5'- uGCCGgGcAGACUaGGGGGU-GCUCAa -3'
miRNA:   3'- gCGGUgUaUCUGGgUCCCUAuCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 163603 0.73 0.636592
Target:  5'- cCGCCGCuGUuuggaaaauuagcAGGCUCGGGGAUGGaCUCAu -3'
miRNA:   3'- -GCGGUG-UA-------------UCUGGGUCCCUAUC-GAGU- -5'
3649 3' -54.7 NC_001650.1 + 167992 0.72 0.678567
Target:  5'- aGCCAauggGGGCCCGGGGGUGGgCcCAa -3'
miRNA:   3'- gCGGUgua-UCUGGGUCCCUAUC-GaGU- -5'
3649 3' -54.7 NC_001650.1 + 132350 0.71 0.748393
Target:  5'- gGCCuCGgugGGGCCCAGGGuguaGUAGCUg- -3'
miRNA:   3'- gCGGuGUa--UCUGGGUCCC----UAUCGAgu -5'
3649 3' -54.7 NC_001650.1 + 101682 0.71 0.767558
Target:  5'- -aUCACGUucuGGACCCGGcacggcGGGUAGCUCAg -3'
miRNA:   3'- gcGGUGUA---UCUGGGUC------CCUAUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 133141 0.7 0.830344
Target:  5'- gCGCCGCGgggGGACCCucGGGcggcuGUAGuCUCGc -3'
miRNA:   3'- -GCGGUGUa--UCUGGGu-CCC-----UAUC-GAGU- -5'
3649 3' -54.7 NC_001650.1 + 164840 0.68 0.884305
Target:  5'- uGCCGCGc-GGCCCGGGGcgGcguuccGCUCGg -3'
miRNA:   3'- gCGGUGUauCUGGGUCCCuaU------CGAGU- -5'
3649 3' -54.7 NC_001650.1 + 173217 0.69 0.862419
Target:  5'- gGCC-CAauagGGACCCAGGGggAGUUg- -3'
miRNA:   3'- gCGGuGUa---UCUGGGUCCCuaUCGAgu -5'
3649 3' -54.7 NC_001650.1 + 132854 0.7 0.821853
Target:  5'- cCGCCACucUGGACUUGGGGAUGGg--- -3'
miRNA:   3'- -GCGGUGu-AUCUGGGUCCCUAUCgagu -5'
3649 3' -54.7 NC_001650.1 + 152526 0.76 0.458902
Target:  5'- aGCCACcacgcaaaAGACCCAGGGAUGGUa-- -3'
miRNA:   3'- gCGGUGua------UCUGGGUCCCUAUCGagu -5'
3649 3' -54.7 NC_001650.1 + 6510 0.69 0.862419
Target:  5'- gGCC-CAauagGGACCCAGGGggAGUUg- -3'
miRNA:   3'- gCGGuGUa---UCUGGGUCCCuaUCGAgu -5'
3649 3' -54.7 NC_001650.1 + 49497 0.75 0.526066
Target:  5'- gGCCAgCuccAGGCCCGGGGGcAGCUCGu -3'
miRNA:   3'- gCGGU-Gua-UCUGGGUCCCUaUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 61346 0.7 0.795373
Target:  5'- gGCgGCGggGGACCCGGGGGcGGCg-- -3'
miRNA:   3'- gCGgUGUa-UCUGGGUCCCUaUCGagu -5'
3649 3' -54.7 NC_001650.1 + 134100 0.68 0.877228
Target:  5'- gCGCCGCGgu--CCCAGGGGcGGcCUCu -3'
miRNA:   3'- -GCGGUGUaucuGGGUCCCUaUC-GAGu -5'
3649 3' -54.7 NC_001650.1 + 152619 0.68 0.897781
Target:  5'- aGCCACcacacaaaAGACCCAGGGAUGa---- -3'
miRNA:   3'- gCGGUGua------UCUGGGUCCCUAUcgagu -5'
3649 3' -54.7 NC_001650.1 + 165116 0.74 0.617085
Target:  5'- gGCCGCGgugGGGCCCGGGGGguggggUGGCg-- -3'
miRNA:   3'- gCGGUGUa--UCUGGGUCCCU------AUCGagu -5'
3649 3' -54.7 NC_001650.1 + 1285 0.72 0.678567
Target:  5'- aGCCAauggGGGCCCGGGGGUGGgCcCAa -3'
miRNA:   3'- gCGGUgua-UCUGGGUCCCUAUC-GaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.