miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3649 3' -54.7 NC_001650.1 + 158864 0.67 0.936051
Target:  5'- aGCCACcUGGACCCccguagccgccuggAGGGAggggGGgaCAg -3'
miRNA:   3'- gCGGUGuAUCUGGG--------------UCCCUa---UCgaGU- -5'
3649 3' -54.7 NC_001650.1 + 62851 0.68 0.904171
Target:  5'- uGCCcCAgGGGCUCGGGGcugGGCUCc -3'
miRNA:   3'- gCGGuGUaUCUGGGUCCCua-UCGAGu -5'
3649 3' -54.7 NC_001650.1 + 164840 0.68 0.884305
Target:  5'- uGCCGCGc-GGCCCGGGGcgGcguuccGCUCGg -3'
miRNA:   3'- gCGGUGUauCUGGGUCCCuaU------CGAGU- -5'
3649 3' -54.7 NC_001650.1 + 7772 0.66 0.954966
Target:  5'- uGCCGgGcAGACUaGGGGGU-GCUCAa -3'
miRNA:   3'- gCGGUgUaUCUGGgUCCCUAuCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 68377 0.66 0.95054
Target:  5'- cCGCCAcCAUcuccaaggugcacGGcCCCGGGcuGGUGGCUCGc -3'
miRNA:   3'- -GCGGU-GUA-------------UCuGGGUCC--CUAUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 73904 0.67 0.932047
Target:  5'- aGCUGCG-AGGCCCAGGGGUugaccguGGCc-- -3'
miRNA:   3'- gCGGUGUaUCUGGGUCCCUA-------UCGagu -5'
3649 3' -54.7 NC_001650.1 + 134100 0.68 0.877228
Target:  5'- gCGCCGCGgu--CCCAGGGGcGGcCUCu -3'
miRNA:   3'- -GCGGUGUaucuGGGUCCCUaUC-GAGu -5'
3649 3' -54.7 NC_001650.1 + 27845 0.66 0.946709
Target:  5'- gGCCGCGUAGG-CCAGGuGGUgcAGCg-- -3'
miRNA:   3'- gCGGUGUAUCUgGGUCC-CUA--UCGagu -5'
3649 3' -54.7 NC_001650.1 + 6510 0.69 0.862419
Target:  5'- gGCC-CAauagGGACCCAGGGggAGUUg- -3'
miRNA:   3'- gCGGuGUa---UCUGGGUCCCuaUCGAgu -5'
3649 3' -54.7 NC_001650.1 + 116368 0.67 0.932556
Target:  5'- aGCCACGcucAGGgUCAGGG--GGCUCAu -3'
miRNA:   3'- gCGGUGUa--UCUgGGUCCCuaUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 6958 0.67 0.937512
Target:  5'- uGCCAgGcAGACUaGGGGGU-GCUCAc -3'
miRNA:   3'- gCGGUgUaUCUGGgUCCCUAuCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 168177 0.66 0.950954
Target:  5'- aGCCAauggGGGCCCGGGG--GGCg-- -3'
miRNA:   3'- gCGGUgua-UCUGGGUCCCuaUCGagu -5'
3649 3' -54.7 NC_001650.1 + 157003 0.67 0.921922
Target:  5'- gGCCACGUccuGGCCUgcGGGGAacagGGCUaCAa -3'
miRNA:   3'- gCGGUGUAu--CUGGG--UCCCUa---UCGA-GU- -5'
3649 3' -54.7 NC_001650.1 + 80308 0.67 0.91508
Target:  5'- gGCCACAUAGAUCUugagguAGGGcgaggaguuggGGCUCu -3'
miRNA:   3'- gCGGUGUAUCUGGG------UCCCua---------UCGAGu -5'
3649 3' -54.7 NC_001650.1 + 152619 0.68 0.897781
Target:  5'- aGCCACcacacaaaAGACCCAGGGAUGa---- -3'
miRNA:   3'- gCGGUGua------UCUGGGUCCCUAUcgagu -5'
3649 3' -54.7 NC_001650.1 + 51019 0.68 0.895159
Target:  5'- gGCCGCGgugcccgagaagaAGACCUGGGGcu-GCUCAg -3'
miRNA:   3'- gCGGUGUa------------UCUGGGUCCCuauCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 109145 0.66 0.954182
Target:  5'- aGCUGCucccugagguGGCCCAGGGAgaaggccAGCUCc -3'
miRNA:   3'- gCGGUGuau-------CUGGGUCCCUa------UCGAGu -5'
3649 3' -54.7 NC_001650.1 + 173217 0.69 0.862419
Target:  5'- gGCC-CAauagGGACCCAGGGggAGUUg- -3'
miRNA:   3'- gCGGuGUa---UCUGGGUCCCuaUCGAgu -5'
3649 3' -54.7 NC_001650.1 + 56227 0.67 0.921922
Target:  5'- gGCCGCGaacgAGucCCCGGGGAgauaggcGCUCGc -3'
miRNA:   3'- gCGGUGUa---UCu-GGGUCCCUau-----CGAGU- -5'
3649 3' -54.7 NC_001650.1 + 31308 0.67 0.916244
Target:  5'- gCGCUuCAUGcGAcCCCAGGGAcguGCUCu -3'
miRNA:   3'- -GCGGuGUAU-CU-GGGUCCCUau-CGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.