miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3649 3' -54.7 NC_001650.1 + 28358 0.7 0.830344
Target:  5'- -cCCGCGgugGGggucucGCCCGGGGAgUGGCUCAa -3'
miRNA:   3'- gcGGUGUa--UC------UGGGUCCCU-AUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 168474 0.66 0.954966
Target:  5'- gGCCAUggAGGCCCuguGGGAgguGCcCAu -3'
miRNA:   3'- gCGGUGuaUCUGGGu--CCCUau-CGaGU- -5'
3649 3' -54.7 NC_001650.1 + 90903 0.7 0.813189
Target:  5'- -uUCACGUAG-UCCAGGGucUGGCUCAc -3'
miRNA:   3'- gcGGUGUAUCuGGGUCCCu-AUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 54207 0.71 0.776963
Target:  5'- gGCCGCccAGGCUCAGGGuuacaGGCUCc -3'
miRNA:   3'- gCGGUGuaUCUGGGUCCCua---UCGAGu -5'
3649 3' -54.7 NC_001650.1 + 45118 0.71 0.758031
Target:  5'- gGCCGCGguu-CCCAGGGA--GCUCGc -3'
miRNA:   3'- gCGGUGUaucuGGGUCCCUauCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 35672 0.65 0.961963
Target:  5'- aGCCAgggguuCGUGGACCUccuggccGGGG--GGCUCAc -3'
miRNA:   3'- gCGGU------GUAUCUGGG-------UCCCuaUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 52620 0.72 0.728817
Target:  5'- gGCCACu--GGCCCGGGGGUc-CUCGg -3'
miRNA:   3'- gCGGUGuauCUGGGUCCCUAucGAGU- -5'
3649 3' -54.7 NC_001650.1 + 49188 0.68 0.904171
Target:  5'- gGCCGCGcgcuGGCCgAGGGcgAGCUg- -3'
miRNA:   3'- gCGGUGUau--CUGGgUCCCuaUCGAgu -5'
3649 3' -54.7 NC_001650.1 + 127975 0.68 0.910327
Target:  5'- cCGCCAUcuacacccAGACCCGcGGGAUAGUg-- -3'
miRNA:   3'- -GCGGUGua------UCUGGGU-CCCUAUCGagu -5'
3649 3' -54.7 NC_001650.1 + 31308 0.67 0.916244
Target:  5'- gCGCUuCAUGcGAcCCCAGGGAcguGCUCu -3'
miRNA:   3'- -GCGGuGUAU-CU-GGGUCCCUau-CGAGu -5'
3649 3' -54.7 NC_001650.1 + 1767 0.66 0.954966
Target:  5'- gGCCAUggAGGCCCuguGGGAgguGCcCAu -3'
miRNA:   3'- gCGGUGuaUCUGGGu--CCCUau-CGaGU- -5'
3649 3' -54.7 NC_001650.1 + 22416 0.66 0.946709
Target:  5'- -cCCACAUGcuGGCCCAGaGGu--GCUCGg -3'
miRNA:   3'- gcGGUGUAU--CUGGGUC-CCuauCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 37199 0.66 0.946709
Target:  5'- gCGCUACAUAGAgggggugaccCCCgAGGGGcUGGCa-- -3'
miRNA:   3'- -GCGGUGUAUCU----------GGG-UCCCU-AUCGagu -5'
3649 3' -54.7 NC_001650.1 + 155795 0.66 0.94223
Target:  5'- cCGCCGCccgggGGACCUguagAGGGucAGCUCc -3'
miRNA:   3'- -GCGGUGua---UCUGGG----UCCCuaUCGAGu -5'
3649 3' -54.7 NC_001650.1 + 155102 0.66 0.94084
Target:  5'- cCGCCAcCGUGGAgacggccgugggguUgCGGGGGUAGUUCc -3'
miRNA:   3'- -GCGGU-GUAUCU--------------GgGUCCCUAUCGAGu -5'
3649 3' -54.7 NC_001650.1 + 149709 0.66 0.940371
Target:  5'- gGCCGCucucuggagauGAUUCAGGGGUAGCg-- -3'
miRNA:   3'- gCGGUGuau--------CUGGGUCCCUAUCGagu -5'
3649 3' -54.7 NC_001650.1 + 66866 0.67 0.937512
Target:  5'- gGCCGCGggAGGCgCCGGGGGcgggGGCg-- -3'
miRNA:   3'- gCGGUGUa-UCUG-GGUCCCUa---UCGagu -5'
3649 3' -54.7 NC_001650.1 + 81193 0.67 0.932556
Target:  5'- gGCCACGUAG-CCCAcGuGGAU-GUUCu -3'
miRNA:   3'- gCGGUGUAUCuGGGU-C-CCUAuCGAGu -5'
3649 3' -54.7 NC_001650.1 + 78351 0.66 0.954966
Target:  5'- gGCCAUccuGACagAGGGggGGCUCAg -3'
miRNA:   3'- gCGGUGuauCUGggUCCCuaUCGAGU- -5'
3649 3' -54.7 NC_001650.1 + 56227 0.67 0.921922
Target:  5'- gGCCGCGaacgAGucCCCGGGGAgauaggcGCUCGc -3'
miRNA:   3'- gCGGUGUa---UCu-GGGUCCCUau-----CGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.