miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 3' -52.5 NC_001650.1 + 157335 0.66 0.989622
Target:  5'- -cGAAguGCAgCCCCUCcugaucGCA-GGUCCu -3'
miRNA:   3'- guCUU--UGUgGGGGAGuu----CGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 38658 0.66 0.989622
Target:  5'- aCAG--GCGCCCCCUCccgguugcgGAGCGgcGGcgCCa -3'
miRNA:   3'- -GUCuuUGUGGGGGAG---------UUCGUa-CCa-GG- -5'
3650 3' -52.5 NC_001650.1 + 26285 0.66 0.989622
Target:  5'- gGGAAACcuCUCCCUCAGGCcgGcGcUCa -3'
miRNA:   3'- gUCUUUGu-GGGGGAGUUCGuaC-C-AGg -5'
3650 3' -52.5 NC_001650.1 + 68848 0.66 0.989622
Target:  5'- cCGGuGAGCAgCCUCUCGGuGCAcgGGUUCg -3'
miRNA:   3'- -GUC-UUUGUgGGGGAGUU-CGUa-CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 37640 0.66 0.989622
Target:  5'- gCGGggGC-CCCCCgUCGGGUuccucaaggugGUGGacaUCCu -3'
miRNA:   3'- -GUCuuUGuGGGGG-AGUUCG-----------UACC---AGG- -5'
3650 3' -52.5 NC_001650.1 + 125221 0.66 0.989622
Target:  5'- cCGGG---ACCCCCUCuggcgaucgaGAGCcucucgcagAUGGUCCu -3'
miRNA:   3'- -GUCUuugUGGGGGAG----------UUCG---------UACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 75673 0.66 0.989622
Target:  5'- ------gGCCCCCUgGcAGUGUGGUCUu -3'
miRNA:   3'- gucuuugUGGGGGAgU-UCGUACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 36467 0.66 0.988217
Target:  5'- aGGAGAU-CCCCCaccuguUCAGGCAgGGaCCg -3'
miRNA:   3'- gUCUUUGuGGGGG------AGUUCGUaCCaGG- -5'
3650 3' -52.5 NC_001650.1 + 49862 0.66 0.988217
Target:  5'- gAGggGCAaggcccaCCCC-CAGGCcUGGUUg -3'
miRNA:   3'- gUCuuUGUg------GGGGaGUUCGuACCAGg -5'
3650 3' -52.5 NC_001650.1 + 6536 0.66 0.988217
Target:  5'- aAGggGCACugCCCaCUCAAcccCAUGGcCCa -3'
miRNA:   3'- gUCuuUGUG--GGG-GAGUUc--GUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 173243 0.66 0.988217
Target:  5'- aAGggGCACugCCCaCUCAAcccCAUGGcCCa -3'
miRNA:   3'- gUCuuUGUG--GGG-GAGUUc--GUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 121598 0.66 0.986668
Target:  5'- aGGcgGCGCCCCCggccgGGGCgAUGG-CCa -3'
miRNA:   3'- gUCuuUGUGGGGGag---UUCG-UACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 41629 0.66 0.986668
Target:  5'- cCAGucACACCCCggguUUCAGgggggcccGCGUGGcUCCa -3'
miRNA:   3'- -GUCuuUGUGGGG----GAGUU--------CGUACC-AGG- -5'
3650 3' -52.5 NC_001650.1 + 111135 0.66 0.986668
Target:  5'- aGGGGACgcgcaaccccggGCCCUCUCAgggagggugugaGGCG-GGUCCc -3'
miRNA:   3'- gUCUUUG------------UGGGGGAGU------------UCGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 61718 0.66 0.986668
Target:  5'- aAGGuacACGCCCCCgaugCAGGCGgccaggaaaagaUGG-CCg -3'
miRNA:   3'- gUCUu--UGUGGGGGa---GUUCGU------------ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 183132 0.66 0.986505
Target:  5'- aGGGAGgACCaaCCCUCAGGCcaucuuaAUGG-CCu -3'
miRNA:   3'- gUCUUUgUGG--GGGAGUUCG-------UACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 16425 0.66 0.986505
Target:  5'- aGGGAGgACCaaCCCUCAGGCcaucuuaAUGG-CCu -3'
miRNA:   3'- gUCUUUgUGG--GGGAGUUCG-------UACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 112191 0.66 0.984968
Target:  5'- aGGggGCugcccaccuuaACCuCCCUCAggAGCAUGcccgcGUCCu -3'
miRNA:   3'- gUCuuUG-----------UGG-GGGAGU--UCGUAC-----CAGG- -5'
3650 3' -52.5 NC_001650.1 + 147213 0.66 0.984968
Target:  5'- cCAGAAugccucucGCGCgCCCUCugau-UGGUCCa -3'
miRNA:   3'- -GUCUU--------UGUGgGGGAGuucguACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 142966 0.66 0.984968
Target:  5'- gGGAAACGCCCuggagaccgCCUCcgcaaacuccGGGCGccUGGUCUc -3'
miRNA:   3'- gUCUUUGUGGG---------GGAG----------UUCGU--ACCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.