miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 3' -52.5 NC_001650.1 + 124172 0.66 0.983107
Target:  5'- aCAGGAACGCCCCCguguacucCAccccCGUGGgccCCa -3'
miRNA:   3'- -GUCUUUGUGGGGGa-------GUuc--GUACCa--GG- -5'
3650 3' -52.5 NC_001650.1 + 183132 0.66 0.986505
Target:  5'- aGGGAGgACCaaCCCUCAGGCcaucuuaAUGG-CCu -3'
miRNA:   3'- gUCUUUgUGG--GGGAGUUCG-------UACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 60962 0.66 0.983107
Target:  5'- gGGGAACACgCgCCUCu-GCAUGGcgCUg -3'
miRNA:   3'- gUCUUUGUGgG-GGAGuuCGUACCa-GG- -5'
3650 3' -52.5 NC_001650.1 + 86179 0.66 0.983107
Target:  5'- ------gGCCCCCgaugcuacacUCGAGCG-GGUCCg -3'
miRNA:   3'- gucuuugUGGGGG----------AGUUCGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 112191 0.66 0.984968
Target:  5'- aGGggGCugcccaccuuaACCuCCCUCAggAGCAUGcccgcGUCCu -3'
miRNA:   3'- gUCuuUG-----------UGG-GGGAGU--UCGUAC-----CAGG- -5'
3650 3' -52.5 NC_001650.1 + 166978 0.66 0.9833
Target:  5'- uCAGAgcacguaccugcacAGCGCCCCCUgCcggccgAGGCGauagcgcucuccuauUGGUCCg -3'
miRNA:   3'- -GUCU--------------UUGUGGGGGA-G------UUCGU---------------ACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 36467 0.66 0.988217
Target:  5'- aGGAGAU-CCCCCaccuguUCAGGCAgGGaCCg -3'
miRNA:   3'- gUCUUUGuGGGGG------AGUUCGUaCCaGG- -5'
3650 3' -52.5 NC_001650.1 + 147213 0.66 0.984968
Target:  5'- cCAGAAugccucucGCGCgCCCUCugau-UGGUCCa -3'
miRNA:   3'- -GUCUU--------UGUGgGGGAGuucguACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 157335 0.66 0.989622
Target:  5'- -cGAAguGCAgCCCCUCcugaucGCA-GGUCCu -3'
miRNA:   3'- guCUU--UGUgGGGGAGuu----CGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 111135 0.66 0.986668
Target:  5'- aGGGGACgcgcaaccccggGCCCUCUCAgggagggugugaGGCG-GGUCCc -3'
miRNA:   3'- gUCUUUG------------UGGGGGAGU------------UCGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 36030 0.66 0.983107
Target:  5'- gGGGGAgGCgCCCagGAGCGUGcUCCu -3'
miRNA:   3'- gUCUUUgUGgGGGagUUCGUACcAGG- -5'
3650 3' -52.5 NC_001650.1 + 75673 0.66 0.989622
Target:  5'- ------gGCCCCCUgGcAGUGUGGUCUu -3'
miRNA:   3'- gucuuugUGGGGGAgU-UCGUACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 37640 0.66 0.989622
Target:  5'- gCGGggGC-CCCCCgUCGGGUuccucaaggugGUGGacaUCCu -3'
miRNA:   3'- -GUCuuUGuGGGGG-AGUUCG-----------UACC---AGG- -5'
3650 3' -52.5 NC_001650.1 + 61389 0.66 0.984789
Target:  5'- uCAGggGCACCCUCUCucuugGGGCAacagcgauagucaUGGg-- -3'
miRNA:   3'- -GUCuuUGUGGGGGAG-----UUCGU-------------ACCagg -5'
3650 3' -52.5 NC_001650.1 + 24070 0.66 0.983107
Target:  5'- aCAGGAugaccgagcGCGCCuCCUUCAGGUcgGGggugagcuUCCa -3'
miRNA:   3'- -GUCUU---------UGUGG-GGGAGUUCGuaCC--------AGG- -5'
3650 3' -52.5 NC_001650.1 + 271 0.66 0.9833
Target:  5'- uCAGAgcacguaccugcacAGCGCCCCCUgCcggccgAGGCGauagcgcucuccuauUGGUCCg -3'
miRNA:   3'- -GUCU--------------UUGUGGGGGA-G------UUCGU---------------ACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 96055 0.66 0.983107
Target:  5'- uCGGcAGCGCCCCC---GGCAcGcGUCCg -3'
miRNA:   3'- -GUCuUUGUGGGGGaguUCGUaC-CAGG- -5'
3650 3' -52.5 NC_001650.1 + 8379 0.66 0.983107
Target:  5'- uCAGGAcccCugCCCCUCAuAGCcauUGG-CCa -3'
miRNA:   3'- -GUCUUu--GugGGGGAGU-UCGu--ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 142966 0.66 0.984968
Target:  5'- gGGAAACGCCCuggagaccgCCUCcgcaaacuccGGGCGccUGGUCUc -3'
miRNA:   3'- gUCUUUGUGGG---------GGAG----------UUCGU--ACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 175086 0.66 0.983107
Target:  5'- uCAGGAcccCugCCCCUCAuAGCcauUGG-CCa -3'
miRNA:   3'- -GUCUUu--GugGGGGAGU-UCGu--ACCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.