miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 3' -52.5 NC_001650.1 + 32036 0.67 0.973893
Target:  5'- aGGGGACugcCCCCCUgGuGC-UGGUCUu -3'
miRNA:   3'- gUCUUUGu--GGGGGAgUuCGuACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 170784 0.67 0.973893
Target:  5'- uGGAGAgGCCCUgcCAGGCAUGGg-- -3'
miRNA:   3'- gUCUUUgUGGGGgaGUUCGUACCagg -5'
3650 3' -52.5 NC_001650.1 + 4077 0.67 0.973893
Target:  5'- uGGAGAgGCCCUgcCAGGCAUGGg-- -3'
miRNA:   3'- gUCUUUgUGGGGgaGUUCGUACCagg -5'
3650 3' -52.5 NC_001650.1 + 142667 0.67 0.97887
Target:  5'- -uGAAGCACCUCUUUAugagaaagugcAGCugcaGGUCCa -3'
miRNA:   3'- guCUUUGUGGGGGAGU-----------UCGua--CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 135978 0.67 0.976478
Target:  5'- uCAGAGcaugGCGgCCUC-CAGGUacGUGGUCCu -3'
miRNA:   3'- -GUCUU----UGUgGGGGaGUUCG--UACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 133207 0.67 0.973893
Target:  5'- -uGAGcccGCGCCCCCUCccAGCGU-GUCUc -3'
miRNA:   3'- guCUU---UGUGGGGGAGu-UCGUAcCAGG- -5'
3650 3' -52.5 NC_001650.1 + 55090 0.67 0.981077
Target:  5'- uCAGAAucccACGCCCCCUaaaAAGCcaGGUaCUa -3'
miRNA:   3'- -GUCUU----UGUGGGGGAg--UUCGuaCCA-GG- -5'
3650 3' -52.5 NC_001650.1 + 42756 0.67 0.981077
Target:  5'- gCAGAu-CACUaCCUCGGGUGUgacGGUCCg -3'
miRNA:   3'- -GUCUuuGUGGgGGAGUUCGUA---CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 134353 0.67 0.971108
Target:  5'- gCGGu--CGCCCCCUUggucuGGUcgGGUCUc -3'
miRNA:   3'- -GUCuuuGUGGGGGAGu----UCGuaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 120503 0.67 0.971108
Target:  5'- gAGGGugGCCUCCUUcgggGAGCA-GGUgCCu -3'
miRNA:   3'- gUCUUugUGGGGGAG----UUCGUaCCA-GG- -5'
3650 3' -52.5 NC_001650.1 + 115395 0.67 0.971108
Target:  5'- cCAGGAuC-CCCCCgucgCAGGCcGUGG-CCa -3'
miRNA:   3'- -GUCUUuGuGGGGGa---GUUCG-UACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 58748 0.68 0.94984
Target:  5'- gGGcGACACCCCCaUCuuccAGCAcgUGGcCCu -3'
miRNA:   3'- gUCuUUGUGGGGG-AGu---UCGU--ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 157490 0.68 0.957835
Target:  5'- gGGAggUGCCCCCagGcGCAUGGgCUa -3'
miRNA:   3'- gUCUuuGUGGGGGagUuCGUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 73746 0.68 0.953954
Target:  5'- ---cAACGCCUCCUaCAAGCAgaugaUGGcUCCg -3'
miRNA:   3'- gucuUUGUGGGGGA-GUUCGU-----ACC-AGG- -5'
3650 3' -52.5 NC_001650.1 + 132938 0.68 0.957835
Target:  5'- -cGAGGguCCCCCcgcggcgCGAGCccuccgGUGGUCCg -3'
miRNA:   3'- guCUUUguGGGGGa------GUUCG------UACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 73586 0.68 0.957835
Target:  5'- cCAGggGCAgggCCUCGuGCGUGGUCUc -3'
miRNA:   3'- -GUCuuUGUgggGGAGUuCGUACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 117476 0.68 0.957835
Target:  5'- -cGGAGCGCCCCCcaccgUCAccAGC-UGGUUa -3'
miRNA:   3'- guCUUUGUGGGGG-----AGU--UCGuACCAGg -5'
3650 3' -52.5 NC_001650.1 + 46489 0.68 0.961485
Target:  5'- uCAGAAGuuCACCCUCUCcccGGCGUcGGggCCg -3'
miRNA:   3'- -GUCUUU--GUGGGGGAGu--UCGUA-CCa-GG- -5'
3650 3' -52.5 NC_001650.1 + 143265 0.68 0.953954
Target:  5'- -cGGAGCGCCucggcgCCCUCc-GCGUGGcCCg -3'
miRNA:   3'- guCUUUGUGG------GGGAGuuCGUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 47805 0.68 0.961485
Target:  5'- uUAGGAACugCaCCCUgCGGGCAgacagGG-CCg -3'
miRNA:   3'- -GUCUUUGugG-GGGA-GUUCGUa----CCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.