Results 61 - 80 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
3650 | 3' | -52.5 | NC_001650.1 | + | 122183 | 0.68 | 0.961485 |
Target: 5'- -uGAccCGCCCCCgc-AGCAUGGccUCCa -3' miRNA: 3'- guCUuuGUGGGGGaguUCGUACC--AGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 143265 | 0.68 | 0.953954 |
Target: 5'- -cGGAGCGCCucggcgCCCUCc-GCGUGGcCCg -3' miRNA: 3'- guCUUUGUGG------GGGAGuuCGUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 73746 | 0.68 | 0.953954 |
Target: 5'- ---cAACGCCUCCUaCAAGCAgaugaUGGcUCCg -3' miRNA: 3'- gucuUUGUGGGGGA-GUUCGU-----ACC-AGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 132938 | 0.68 | 0.957835 |
Target: 5'- -cGAGGguCCCCCcgcggcgCGAGCccuccgGUGGUCCg -3' miRNA: 3'- guCUUUguGGGGGa------GUUCG------UACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 73586 | 0.68 | 0.957835 |
Target: 5'- cCAGggGCAgggCCUCGuGCGUGGUCUc -3' miRNA: 3'- -GUCuuUGUgggGGAGUuCGUACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 46489 | 0.68 | 0.961485 |
Target: 5'- uCAGAAGuuCACCCUCUCcccGGCGUcGGggCCg -3' miRNA: 3'- -GUCUUU--GUGGGGGAGu--UCGUA-CCa-GG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 122282 | 0.68 | 0.961485 |
Target: 5'- aCAGGucccugcACGCCCCCgcggcgcgCGAGCAgcUGG-CCg -3' miRNA: 3'- -GUCUu------UGUGGGGGa-------GUUCGU--ACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 138667 | 0.68 | 0.96491 |
Target: 5'- cCAGcAugGCCCCUgucugCcAGCAUGGcCCc -3' miRNA: 3'- -GUCuUugUGGGGGa----GuUCGUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 138742 | 0.68 | 0.96491 |
Target: 5'- cCAGcAugGCCCCUgucugCcAGCAUGGcCCc -3' miRNA: 3'- -GUCuUugUGGGGGa----GuUCGUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 76663 | 0.68 | 0.966219 |
Target: 5'- cCAGGAuguacaugggccacuGCACCCCCguggccuugUC-GGCGUGGUgCa -3' miRNA: 3'- -GUCUU---------------UGUGGGGG---------AGuUCGUACCAgG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 47520 | 0.68 | 0.968116 |
Target: 5'- gGGGGAC-CCCCCU-GAGCuaucccugGGUCUa -3' miRNA: 3'- gUCUUUGuGGGGGAgUUCGua------CCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 136359 | 0.68 | 0.96491 |
Target: 5'- gGGggGCGCCUUCagGcGCAUGG-CCa -3' miRNA: 3'- gUCuuUGUGGGGGagUuCGUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 156310 | 0.68 | 0.968116 |
Target: 5'- uGGAggUGCCCCUgggCAaccuGGCcggGGUCCu -3' miRNA: 3'- gUCUuuGUGGGGGa--GU----UCGua-CCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 32213 | 0.68 | 0.967177 |
Target: 5'- uCAGguACACCCCCUCcccuagcucaccagAGGCGgacUCCg -3' miRNA: 3'- -GUCuuUGUGGGGGAG--------------UUCGUaccAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 117476 | 0.68 | 0.957835 |
Target: 5'- -cGGAGCGCCCCCcaccgUCAccAGC-UGGUUa -3' miRNA: 3'- guCUUUGUGGGGG-----AGU--UCGuACCAGg -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 47805 | 0.68 | 0.961485 |
Target: 5'- uUAGGAACugCaCCCUgCGGGCAgacagGG-CCg -3' miRNA: 3'- -GUCUUUGugG-GGGA-GUUCGUa----CCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 129386 | 0.68 | 0.968116 |
Target: 5'- aCGGAGGC-CCCCaUCAacAGCAUGGa-- -3' miRNA: 3'- -GUCUUUGuGGGGgAGU--UCGUACCagg -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 26950 | 0.69 | 0.936059 |
Target: 5'- uGGAGGCggcgcacaGCCCCUcCAGGCcgGGcCCg -3' miRNA: 3'- gUCUUUG--------UGGGGGaGUUCGuaCCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 109280 | 0.69 | 0.945488 |
Target: 5'- gGGggGCGCCCCgCUCGucGCccUGG-CCa -3' miRNA: 3'- gUCuuUGUGGGG-GAGUu-CGu-ACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 68709 | 0.69 | 0.940895 |
Target: 5'- aAG-AGCGCCCCCUCGcggagacccagcGGCAcgucauggUGGcCCg -3' miRNA: 3'- gUCuUUGUGGGGGAGU------------UCGU--------ACCaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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