Results 101 - 120 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3650 | 3' | -52.5 | NC_001650.1 | + | 134126 | 0.7 | 0.895359 |
Target: 5'- gGGggGCGCCCCCagcuguacUCuGGGCGccgcGGUCCc -3' miRNA: 3'- gUCuuUGUGGGGG--------AG-UUCGUa---CCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 60841 | 0.7 | 0.895359 |
Target: 5'- uGGAGACGguggcCCCCCUCAaccGGCAgGGcgCCu -3' miRNA: 3'- gUCUUUGU-----GGGGGAGU---UCGUaCCa-GG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 89204 | 0.7 | 0.908204 |
Target: 5'- gGGAAGCGCgaCCCCUCGcGGCA-GG-CCg -3' miRNA: 3'- gUCUUUGUG--GGGGAGU-UCGUaCCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 55040 | 0.7 | 0.914264 |
Target: 5'- gCAGAAcccagUACCCgCgCGAGCcgGGUCCa -3' miRNA: 3'- -GUCUUu----GUGGGgGaGUUCGuaCCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 50235 | 0.7 | 0.920081 |
Target: 5'- ------aGCCCCCUCAGGCccGGgCCu -3' miRNA: 3'- gucuuugUGGGGGAGUUCGuaCCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 180626 | 0.7 | 0.914264 |
Target: 5'- gAGAGGCGCCCCCUgGAcccCcgGGaCCa -3' miRNA: 3'- gUCUUUGUGGGGGAgUUc--GuaCCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 110654 | 0.71 | 0.869884 |
Target: 5'- gGGGAcccguccccgcgcacGCGCCCCCUCGGGCGaugccGGaCCg -3' miRNA: 3'- gUCUU---------------UGUGGGGGAGUUCGUa----CCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 173454 | 0.71 | 0.874334 |
Target: 5'- gCAGuGAGCACCCCCUagucugccuGGCAacccaGGUCCc -3' miRNA: 3'- -GUC-UUUGUGGGGGAgu-------UCGUa----CCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 83319 | 0.71 | 0.888582 |
Target: 5'- cCAGGAugACCCagUCGAGgGaGGUCCu -3' miRNA: 3'- -GUCUUugUGGGggAGUUCgUaCCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 6747 | 0.71 | 0.874334 |
Target: 5'- gCAGuGAGCACCCCCUagucugccuGGCAacccaGGUCCc -3' miRNA: 3'- -GUC-UUUGUGGGGGAgu-------UCGUa----CCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 94680 | 0.71 | 0.859196 |
Target: 5'- gAGGAGCGCCgCCUCG-GUcUGGUCg -3' miRNA: 3'- gUCUUUGUGGgGGAGUuCGuACCAGg -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 131990 | 0.72 | 0.843216 |
Target: 5'- gGGAGGCAgCgCCUUCAAGU--GGUCCa -3' miRNA: 3'- gUCUUUGUgG-GGGAGUUCGuaCCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 24748 | 0.72 | 0.826449 |
Target: 5'- cCAGGAaggACACCUUCUCccuGGGCGUGGgcUCCa -3' miRNA: 3'- -GUCUU---UGUGGGGGAG---UUCGUACC--AGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 26808 | 0.72 | 0.826449 |
Target: 5'- gGGAGccgcGCGCCCCUUCGAGU-UGG-CCg -3' miRNA: 3'- gUCUU----UGUGGGGGAGUUCGuACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 130990 | 0.72 | 0.826449 |
Target: 5'- aGGcgGCGCCCCUgucgCGGGCccucuauUGGUCCa -3' miRNA: 3'- gUCuuUGUGGGGGa---GUUCGu------ACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 137017 | 0.72 | 0.826449 |
Target: 5'- gAGAGGCACCUCC-CAAacugggaguGCA-GGUCCa -3' miRNA: 3'- gUCUUUGUGGGGGaGUU---------CGUaCCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 83545 | 0.72 | 0.843216 |
Target: 5'- -cGggGCGCCCCguUUCAGGC-UGGcCCu -3' miRNA: 3'- guCuuUGUGGGG--GAGUUCGuACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 89163 | 0.72 | 0.826449 |
Target: 5'- gAGGAGgGCCggcgggaggCCCUCGAagucgcGCGUGGUCCu -3' miRNA: 3'- gUCUUUgUGG---------GGGAGUU------CGUACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 37409 | 0.72 | 0.851309 |
Target: 5'- uCGGggGuCACCCCCUCuauguAGCGcuUGGaguucUCCa -3' miRNA: 3'- -GUCuuU-GUGGGGGAGu----UCGU--ACC-----AGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 69028 | 0.72 | 0.851309 |
Target: 5'- -cGAGGCGCcccgCCCCUCGAGCGaGGgccCCg -3' miRNA: 3'- guCUUUGUG----GGGGAGUUCGUaCCa--GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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