Results 41 - 60 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
3650 | 3' | -52.5 | NC_001650.1 | + | 6147 | 0.69 | 0.925652 |
Target: 5'- gGGGGACugCCCaCUCAAcccCAUGG-CCa -3' miRNA: 3'- gUCUUUGugGGG-GAGUUc--GUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 171708 | 0.69 | 0.925652 |
Target: 5'- cCGGAGGCcuaCCCCUCGAGCcccGG-CCu -3' miRNA: 3'- -GUCUUUGug-GGGGAGUUCGua-CCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 109280 | 0.69 | 0.945488 |
Target: 5'- gGGggGCGCCCCgCUCGucGCccUGG-CCa -3' miRNA: 3'- gUCuuUGUGGGG-GAGUu-CGu-ACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 68709 | 0.69 | 0.940895 |
Target: 5'- aAG-AGCGCCCCCUCGcggagacccagcGGCAcgucauggUGGcCCg -3' miRNA: 3'- gUCuUUGUGGGGGAGU------------UCGU--------ACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 133929 | 0.69 | 0.936059 |
Target: 5'- uGGggGCGCCCCC-CAgaccccGGCAggcGG-CCg -3' miRNA: 3'- gUCuuUGUGGGGGaGU------UCGUa--CCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 44023 | 0.69 | 0.930457 |
Target: 5'- -cGGAGCugCCCCUUGggauuccAGCAUGGcaagaUCCc -3' miRNA: 3'- guCUUUGugGGGGAGU-------UCGUACC-----AGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 138705 | 0.69 | 0.925652 |
Target: 5'- cCAGcAugGCCCCuguCUCcAGCAUGGcCCc -3' miRNA: 3'- -GUCuUugUGGGG---GAGuUCGUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 97833 | 0.69 | 0.925652 |
Target: 5'- cCAGAAGCAUCgCCCUCGc-CcgGGUCa -3' miRNA: 3'- -GUCUUUGUGG-GGGAGUucGuaCCAGg -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 797 | 0.69 | 0.945488 |
Target: 5'- cCGGccuCGCCCCCUCAuuuGCAU-GUCUc -3' miRNA: 3'- -GUCuuuGUGGGGGAGUu--CGUAcCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 31293 | 0.69 | 0.925106 |
Target: 5'- uGGAGuugaacACGCCCCCgcaaaacagggacUCGAGCGgggagGGUCUg -3' miRNA: 3'- gUCUU------UGUGGGGG-------------AGUUCGUa----CCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 81513 | 0.69 | 0.936059 |
Target: 5'- gGGAGGCGCUCCagacguUCAAGCAaaaGUCCa -3' miRNA: 3'- gUCUUUGUGGGGg-----AGUUCGUac-CAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 172854 | 0.69 | 0.925652 |
Target: 5'- gGGGGACugCCCaCUCAAcccCAUGG-CCa -3' miRNA: 3'- gUCUUUGugGGG-GAGUUc--GUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 170181 | 0.69 | 0.940895 |
Target: 5'- uGGGAGCAgCCUgcCAGGCAUGGggaUCCa -3' miRNA: 3'- gUCUUUGUgGGGgaGUUCGUACC---AGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 114260 | 0.69 | 0.925652 |
Target: 5'- aGGAGGcCGCCCCC---AGCAUcccGGUCCc -3' miRNA: 3'- gUCUUU-GUGGGGGaguUCGUA---CCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 26950 | 0.69 | 0.936059 |
Target: 5'- uGGAGGCggcgcacaGCCCCUcCAGGCcgGGcCCg -3' miRNA: 3'- gUCUUUG--------UGGGGGaGUUCGuaCCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 69925 | 0.69 | 0.940895 |
Target: 5'- cCGGAGACugCUCCUCGgGGCcugcUGGUaCCc -3' miRNA: 3'- -GUCUUUGugGGGGAGU-UCGu---ACCA-GG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 3474 | 0.69 | 0.940895 |
Target: 5'- uGGGAGCAgCCUgcCAGGCAUGGggaUCCa -3' miRNA: 3'- gUCUUUGUgGGGgaGUUCGUACC---AGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 5001 | 0.69 | 0.925652 |
Target: 5'- cCGGAGGCcuaCCCCUCGAGCcccGG-CCu -3' miRNA: 3'- -GUCUUUGug-GGGGAGUUCGua-CCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 47805 | 0.68 | 0.961485 |
Target: 5'- uUAGGAACugCaCCCUgCGGGCAgacagGG-CCg -3' miRNA: 3'- -GUCUUUGugG-GGGA-GUUCGUa----CCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 46489 | 0.68 | 0.961485 |
Target: 5'- uCAGAAGuuCACCCUCUCcccGGCGUcGGggCCg -3' miRNA: 3'- -GUCUUU--GUGGGGGAGu--UCGUA-CCa-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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