Results 81 - 100 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3650 | 3' | -52.5 | NC_001650.1 | + | 46489 | 0.68 | 0.961485 |
Target: 5'- uCAGAAGuuCACCCUCUCcccGGCGUcGGggCCg -3' miRNA: 3'- -GUCUUU--GUGGGGGAGu--UCGUA-CCa-GG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 83098 | 0.68 | 0.96491 |
Target: 5'- aCAGGGcuAUAUCCCCcagcucCAGGCAccuccUGGUCCc -3' miRNA: 3'- -GUCUU--UGUGGGGGa-----GUUCGU-----ACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 131188 | 0.68 | 0.961485 |
Target: 5'- aCAGggGCGCCgCCUCGaagacgGGCcucuggGaGUCCa -3' miRNA: 3'- -GUCuuUGUGGgGGAGU------UCGua----C-CAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 122183 | 0.68 | 0.961485 |
Target: 5'- -uGAccCGCCCCCgc-AGCAUGGccUCCa -3' miRNA: 3'- guCUuuGUGGGGGaguUCGUACC--AGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 118904 | 0.67 | 0.981077 |
Target: 5'- aCAGGAaccuguGCACCCCCUUcuccAGCuu-GUCCc -3' miRNA: 3'- -GUCUU------UGUGGGGGAGu---UCGuacCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 134353 | 0.67 | 0.971108 |
Target: 5'- gCGGu--CGCCCCCUUggucuGGUcgGGUCUc -3' miRNA: 3'- -GUCuuuGUGGGGGAGu----UCGuaCCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 133207 | 0.67 | 0.973893 |
Target: 5'- -uGAGcccGCGCCCCCUCccAGCGU-GUCUc -3' miRNA: 3'- guCUU---UGUGGGGGAGu-UCGUAcCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 23846 | 0.67 | 0.973893 |
Target: 5'- ----uGCGCCCCCUUGAG-GUGGggCCa -3' miRNA: 3'- gucuuUGUGGGGGAGUUCgUACCa-GG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 89739 | 0.67 | 0.971108 |
Target: 5'- gGGAGAcCACCCCC-CGccuuGCGUGGggCUg -3' miRNA: 3'- gUCUUU-GUGGGGGaGUu---CGUACCa-GG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 120503 | 0.67 | 0.971108 |
Target: 5'- gAGGGugGCCUCCUUcgggGAGCA-GGUgCCu -3' miRNA: 3'- gUCUUugUGGGGGAG----UUCGUaCCA-GG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 115395 | 0.67 | 0.971108 |
Target: 5'- cCAGGAuC-CCCCCgucgCAGGCcGUGG-CCa -3' miRNA: 3'- -GUCUUuGuGGGGGa---GUUCG-UACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 4077 | 0.67 | 0.973893 |
Target: 5'- uGGAGAgGCCCUgcCAGGCAUGGg-- -3' miRNA: 3'- gUCUUUgUGGGGgaGUUCGUACCagg -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 170784 | 0.67 | 0.973893 |
Target: 5'- uGGAGAgGCCCUgcCAGGCAUGGg-- -3' miRNA: 3'- gUCUUUgUGGGGgaGUUCGUACCagg -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 66311 | 0.67 | 0.973893 |
Target: 5'- aAGGGACGCCCCCaaagaUCA-GCucGGUCa -3' miRNA: 3'- gUCUUUGUGGGGG-----AGUuCGuaCCAGg -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 32036 | 0.67 | 0.973893 |
Target: 5'- aGGGGACugcCCCCCUgGuGC-UGGUCUu -3' miRNA: 3'- gUCUUUGu--GGGGGAgUuCGuACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 88735 | 0.67 | 0.973893 |
Target: 5'- uCGGGGAaGCCCCCggccggCAAGCggGGcaggCCg -3' miRNA: 3'- -GUCUUUgUGGGGGa-----GUUCGuaCCa---GG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 10726 | 0.67 | 0.973893 |
Target: 5'- ----cGCGCgCCCCUCAAG-AUGG-CCg -3' miRNA: 3'- gucuuUGUG-GGGGAGUUCgUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 177433 | 0.67 | 0.973893 |
Target: 5'- ----cGCGCgCCCCUCAAG-AUGG-CCg -3' miRNA: 3'- gucuuUGUG-GGGGAGUUCgUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 110499 | 0.67 | 0.976478 |
Target: 5'- aAGAGGCcggACCCCC-CGAGCAauGUCa -3' miRNA: 3'- gUCUUUG---UGGGGGaGUUCGUacCAGg -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 158350 | 0.67 | 0.976478 |
Target: 5'- aAGgcGC-CCCCCUCGgcGGCcggGGUCa -3' miRNA: 3'- gUCuuUGuGGGGGAGU--UCGua-CCAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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