miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 3' -52.5 NC_001650.1 + 48059 1.11 0.005241
Target:  5'- cCAGAAACACCCCCUCAAGCAUGGUCCc -3'
miRNA:   3'- -GUCUUUGUGGGGGAGUUCGUACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 50457 0.86 0.205417
Target:  5'- gAGAGGCGCCCCUgUCGcGCAUGGUCCc -3'
miRNA:   3'- gUCUUUGUGGGGG-AGUuCGUACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 29450 0.77 0.589387
Target:  5'- aCGGGGACaACCCCCacgugaUCAGGgaCGUGGUCCu -3'
miRNA:   3'- -GUCUUUG-UGGGGG------AGUUC--GUACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 128473 0.77 0.589387
Target:  5'- uGGGcccCACCCCCUCGGGCAcgGGcCCg -3'
miRNA:   3'- gUCUuu-GUGGGGGAGUUCGUa-CCaGG- -5'
3650 3' -52.5 NC_001650.1 + 31499 0.76 0.620417
Target:  5'- -uGAAGCGCCCCCgUCGGGCuugaggGGcUCCg -3'
miRNA:   3'- guCUUUGUGGGGG-AGUUCGua----CC-AGG- -5'
3650 3' -52.5 NC_001650.1 + 132725 0.76 0.620417
Target:  5'- cCAGGuAAgACCCCUUCAGGUAguuguuugGGUCCa -3'
miRNA:   3'- -GUCU-UUgUGGGGGAGUUCGUa-------CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 120145 0.76 0.630788
Target:  5'- gCGGggGCACCagCCUC-AGCA-GGUCCc -3'
miRNA:   3'- -GUCuuUGUGGg-GGAGuUCGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 23040 0.75 0.668075
Target:  5'- uCAGAGAcCGCCUCCUCGGGCAggaggcugguguaGGUCUu -3'
miRNA:   3'- -GUCUUU-GUGGGGGAGUUCGUa------------CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 130882 0.74 0.713074
Target:  5'- aCAaGAGCGCCCCCgagacccaCGAGCG-GGUCCu -3'
miRNA:   3'- -GUcUUUGUGGGGGa-------GUUCGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 134957 0.73 0.762498
Target:  5'- aGGggGCGCCgCCUCcacAGCAgcaucuggggGGUCCg -3'
miRNA:   3'- gUCuuUGUGGgGGAGu--UCGUa---------CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 23986 0.73 0.762498
Target:  5'- aGGAcuugaugucAGCGcCCCCCUCGGGCG-GGUCUc -3'
miRNA:   3'- gUCU---------UUGU-GGGGGAGUUCGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 37696 0.73 0.790804
Target:  5'- cCAGGucCACCCCCUUcauGAGCAgccugucggUGGUCa -3'
miRNA:   3'- -GUCUuuGUGGGGGAG---UUCGU---------ACCAGg -5'
3650 3' -52.5 NC_001650.1 + 107226 0.73 0.790804
Target:  5'- gAGAAGCuggccGCCgCCCUCAAGauggacgGGUCCa -3'
miRNA:   3'- gUCUUUG-----UGG-GGGAGUUCgua----CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 24748 0.72 0.826449
Target:  5'- cCAGGAaggACACCUUCUCccuGGGCGUGGgcUCCa -3'
miRNA:   3'- -GUCUU---UGUGGGGGAG---UUCGUACC--AGG- -5'
3650 3' -52.5 NC_001650.1 + 26808 0.72 0.826449
Target:  5'- gGGAGccgcGCGCCCCUUCGAGU-UGG-CCg -3'
miRNA:   3'- gUCUU----UGUGGGGGAGUUCGuACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 137017 0.72 0.826449
Target:  5'- gAGAGGCACCUCC-CAAacugggaguGCA-GGUCCa -3'
miRNA:   3'- gUCUUUGUGGGGGaGUU---------CGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 130990 0.72 0.826449
Target:  5'- aGGcgGCGCCCCUgucgCGGGCccucuauUGGUCCa -3'
miRNA:   3'- gUCuuUGUGGGGGa---GUUCGu------ACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 50637 0.72 0.826449
Target:  5'- -uGAuGCGCCCCCUCGAGgGgccGGUgCCc -3'
miRNA:   3'- guCUuUGUGGGGGAGUUCgUa--CCA-GG- -5'
3650 3' -52.5 NC_001650.1 + 89163 0.72 0.826449
Target:  5'- gAGGAGgGCCggcgggaggCCCUCGAagucgcGCGUGGUCCu -3'
miRNA:   3'- gUCUUUgUGG---------GGGAGUU------CGUACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 83545 0.72 0.843216
Target:  5'- -cGggGCGCCCCguUUCAGGC-UGGcCCu -3'
miRNA:   3'- guCuuUGUGGGG--GAGUUCGuACCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.