miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 3' -52.5 NC_001650.1 + 83545 0.72 0.843216
Target:  5'- -cGggGCGCCCCguUUCAGGC-UGGcCCu -3'
miRNA:   3'- guCuuUGUGGGG--GAGUUCGuACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 62297 0.72 0.843216
Target:  5'- gAGAAaccgGCACCgCCCUCAGcCAUGG-CCu -3'
miRNA:   3'- gUCUU----UGUGG-GGGAGUUcGUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 37409 0.72 0.851309
Target:  5'- uCGGggGuCACCCCCUCuauguAGCGcuUGGaguucUCCa -3'
miRNA:   3'- -GUCuuU-GUGGGGGAGu----UCGU--ACC-----AGG- -5'
3650 3' -52.5 NC_001650.1 + 69028 0.72 0.851309
Target:  5'- -cGAGGCGCcccgCCCCUCGAGCGaGGgccCCg -3'
miRNA:   3'- guCUUUGUG----GGGGAGUUCGUaCCa--GG- -5'
3650 3' -52.5 NC_001650.1 + 94680 0.71 0.859196
Target:  5'- gAGGAGCGCCgCCUCG-GUcUGGUCg -3'
miRNA:   3'- gUCUUUGUGGgGGAGUuCGuACCAGg -5'
3650 3' -52.5 NC_001650.1 + 110654 0.71 0.869884
Target:  5'- gGGGAcccguccccgcgcacGCGCCCCCUCGGGCGaugccGGaCCg -3'
miRNA:   3'- gUCUU---------------UGUGGGGGAGUUCGUa----CCaGG- -5'
3650 3' -52.5 NC_001650.1 + 6747 0.71 0.874334
Target:  5'- gCAGuGAGCACCCCCUagucugccuGGCAacccaGGUCCc -3'
miRNA:   3'- -GUC-UUUGUGGGGGAgu-------UCGUa----CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 173454 0.71 0.874334
Target:  5'- gCAGuGAGCACCCCCUagucugccuGGCAacccaGGUCCc -3'
miRNA:   3'- -GUC-UUUGUGGGGGAgu-------UCGUa----CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 83319 0.71 0.888582
Target:  5'- cCAGGAugACCCagUCGAGgGaGGUCCu -3'
miRNA:   3'- -GUCUUugUGGGggAGUUCgUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 60841 0.7 0.895359
Target:  5'- uGGAGACGguggcCCCCCUCAaccGGCAgGGcgCCu -3'
miRNA:   3'- gUCUUUGU-----GGGGGAGU---UCGUaCCa-GG- -5'
3650 3' -52.5 NC_001650.1 + 102195 0.7 0.895359
Target:  5'- cCAGAGACACCCCCaggcgcacucCAGGCAguucuuucaGGgagCCg -3'
miRNA:   3'- -GUCUUUGUGGGGGa---------GUUCGUa--------CCa--GG- -5'
3650 3' -52.5 NC_001650.1 + 134126 0.7 0.895359
Target:  5'- gGGggGCGCCCCCagcuguacUCuGGGCGccgcGGUCCc -3'
miRNA:   3'- gUCuuUGUGGGGG--------AG-UUCGUa---CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 158630 0.7 0.895359
Target:  5'- uCAGGGACcuguccCCCCCUCccuccAGGCGgcuacgggGGUCCa -3'
miRNA:   3'- -GUCUUUGu-----GGGGGAG-----UUCGUa-------CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 89204 0.7 0.908204
Target:  5'- gGGAAGCGCgaCCCCUCGcGGCA-GG-CCg -3'
miRNA:   3'- gUCUUUGUG--GGGGAGU-UCGUaCCaGG- -5'
3650 3' -52.5 NC_001650.1 + 142134 0.7 0.908204
Target:  5'- -uGGAGCACUCCUUCcAGCcgGGgagCCc -3'
miRNA:   3'- guCUUUGUGGGGGAGuUCGuaCCa--GG- -5'
3650 3' -52.5 NC_001650.1 + 180626 0.7 0.914264
Target:  5'- gAGAGGCGCCCCCUgGAcccCcgGGaCCa -3'
miRNA:   3'- gUCUUUGUGGGGGAgUUc--GuaCCaGG- -5'
3650 3' -52.5 NC_001650.1 + 55040 0.7 0.914264
Target:  5'- gCAGAAcccagUACCCgCgCGAGCcgGGUCCa -3'
miRNA:   3'- -GUCUUu----GUGGGgGaGUUCGuaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 50235 0.7 0.920081
Target:  5'- ------aGCCCCCUCAGGCccGGgCCu -3'
miRNA:   3'- gucuuugUGGGGGAGUUCGuaCCaGG- -5'
3650 3' -52.5 NC_001650.1 + 31293 0.69 0.925106
Target:  5'- uGGAGuugaacACGCCCCCgcaaaacagggacUCGAGCGgggagGGUCUg -3'
miRNA:   3'- gUCUU------UGUGGGGG-------------AGUUCGUa----CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 97833 0.69 0.925652
Target:  5'- cCAGAAGCAUCgCCCUCGc-CcgGGUCa -3'
miRNA:   3'- -GUCUUUGUGG-GGGAGUucGuaCCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.