miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 3' -52.5 NC_001650.1 + 171708 0.69 0.925652
Target:  5'- cCGGAGGCcuaCCCCUCGAGCcccGG-CCu -3'
miRNA:   3'- -GUCUUUGug-GGGGAGUUCGua-CCaGG- -5'
3650 3' -52.5 NC_001650.1 + 79581 0.69 0.925652
Target:  5'- cCAGAGGCugCCCgUCu-GCGUGGa-- -3'
miRNA:   3'- -GUCUUUGugGGGgAGuuCGUACCagg -5'
3650 3' -52.5 NC_001650.1 + 97833 0.69 0.925652
Target:  5'- cCAGAAGCAUCgCCCUCGc-CcgGGUCa -3'
miRNA:   3'- -GUCUUUGUGG-GGGAGUucGuaCCAGg -5'
3650 3' -52.5 NC_001650.1 + 114260 0.69 0.925652
Target:  5'- aGGAGGcCGCCCCC---AGCAUcccGGUCCc -3'
miRNA:   3'- gUCUUU-GUGGGGGaguUCGUA---CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 6147 0.69 0.925652
Target:  5'- gGGGGACugCCCaCUCAAcccCAUGG-CCa -3'
miRNA:   3'- gUCUUUGugGGG-GAGUUc--GUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 5001 0.69 0.925652
Target:  5'- cCGGAGGCcuaCCCCUCGAGCcccGG-CCu -3'
miRNA:   3'- -GUCUUUGug-GGGGAGUUCGua-CCaGG- -5'
3650 3' -52.5 NC_001650.1 + 172854 0.69 0.925652
Target:  5'- gGGGGACugCCCaCUCAAcccCAUGG-CCa -3'
miRNA:   3'- gUCUUUGugGGG-GAGUUc--GUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 44023 0.69 0.930457
Target:  5'- -cGGAGCugCCCCUUGggauuccAGCAUGGcaagaUCCc -3'
miRNA:   3'- guCUUUGugGGGGAGU-------UCGUACC-----AGG- -5'
3650 3' -52.5 NC_001650.1 + 26950 0.69 0.936059
Target:  5'- uGGAGGCggcgcacaGCCCCUcCAGGCcgGGcCCg -3'
miRNA:   3'- gUCUUUG--------UGGGGGaGUUCGuaCCaGG- -5'
3650 3' -52.5 NC_001650.1 + 133929 0.69 0.936059
Target:  5'- uGGggGCGCCCCC-CAgaccccGGCAggcGG-CCg -3'
miRNA:   3'- gUCuuUGUGGGGGaGU------UCGUa--CCaGG- -5'
3650 3' -52.5 NC_001650.1 + 81513 0.69 0.936059
Target:  5'- gGGAGGCGCUCCagacguUCAAGCAaaaGUCCa -3'
miRNA:   3'- gUCUUUGUGGGGg-----AGUUCGUac-CAGG- -5'
3650 3' -52.5 NC_001650.1 + 68709 0.69 0.940895
Target:  5'- aAG-AGCGCCCCCUCGcggagacccagcGGCAcgucauggUGGcCCg -3'
miRNA:   3'- gUCuUUGUGGGGGAGU------------UCGU--------ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 3474 0.69 0.940895
Target:  5'- uGGGAGCAgCCUgcCAGGCAUGGggaUCCa -3'
miRNA:   3'- gUCUUUGUgGGGgaGUUCGUACC---AGG- -5'
3650 3' -52.5 NC_001650.1 + 69925 0.69 0.940895
Target:  5'- cCGGAGACugCUCCUCGgGGCcugcUGGUaCCc -3'
miRNA:   3'- -GUCUUUGugGGGGAGU-UCGu---ACCA-GG- -5'
3650 3' -52.5 NC_001650.1 + 170181 0.69 0.940895
Target:  5'- uGGGAGCAgCCUgcCAGGCAUGGggaUCCa -3'
miRNA:   3'- gUCUUUGUgGGGgaGUUCGUACC---AGG- -5'
3650 3' -52.5 NC_001650.1 + 797 0.69 0.945488
Target:  5'- cCGGccuCGCCCCCUCAuuuGCAU-GUCUc -3'
miRNA:   3'- -GUCuuuGUGGGGGAGUu--CGUAcCAGG- -5'
3650 3' -52.5 NC_001650.1 + 109280 0.69 0.945488
Target:  5'- gGGggGCGCCCCgCUCGucGCccUGG-CCa -3'
miRNA:   3'- gUCuuUGUGGGG-GAGUu-CGu-ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 167503 0.69 0.945488
Target:  5'- cCGGccuCGCCCCCUCAuuuGCAU-GUCUc -3'
miRNA:   3'- -GUCuuuGUGGGGGAGUu--CGUAcCAGG- -5'
3650 3' -52.5 NC_001650.1 + 58748 0.68 0.94984
Target:  5'- gGGcGACACCCCCaUCuuccAGCAcgUGGcCCu -3'
miRNA:   3'- gUCuUUGUGGGGG-AGu---UCGU--ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 73746 0.68 0.953954
Target:  5'- ---cAACGCCUCCUaCAAGCAgaugaUGGcUCCg -3'
miRNA:   3'- gucuUUGUGGGGGA-GUUCGU-----ACC-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.