Results 61 - 80 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
3650 | 3' | -52.5 | NC_001650.1 | + | 73746 | 0.68 | 0.953954 |
Target: 5'- ---cAACGCCUCCUaCAAGCAgaugaUGGcUCCg -3' miRNA: 3'- gucuUUGUGGGGGA-GUUCGU-----ACC-AGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 73586 | 0.68 | 0.957835 |
Target: 5'- cCAGggGCAgggCCUCGuGCGUGGUCUc -3' miRNA: 3'- -GUCuuUGUgggGGAGUuCGUACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 132938 | 0.68 | 0.957835 |
Target: 5'- -cGAGGguCCCCCcgcggcgCGAGCccuccgGUGGUCCg -3' miRNA: 3'- guCUUUguGGGGGa------GUUCG------UACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 157490 | 0.68 | 0.957835 |
Target: 5'- gGGAggUGCCCCCagGcGCAUGGgCUa -3' miRNA: 3'- gUCUuuGUGGGGGagUuCGUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 117476 | 0.68 | 0.957835 |
Target: 5'- -cGGAGCGCCCCCcaccgUCAccAGC-UGGUUa -3' miRNA: 3'- guCUUUGUGGGGG-----AGU--UCGuACCAGg -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 95212 | 0.68 | 0.957835 |
Target: 5'- uCAGGGACAUgCCCUgGgccuuGGCuAUGGUCa -3' miRNA: 3'- -GUCUUUGUGgGGGAgU-----UCG-UACCAGg -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 46489 | 0.68 | 0.961485 |
Target: 5'- uCAGAAGuuCACCCUCUCcccGGCGUcGGggCCg -3' miRNA: 3'- -GUCUUU--GUGGGGGAGu--UCGUA-CCa-GG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 181823 | 0.68 | 0.961485 |
Target: 5'- aCAucAGCACCCCCgUUggGcCGUGG-CCu -3' miRNA: 3'- -GUcuUUGUGGGGG-AGuuC-GUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 131188 | 0.68 | 0.961485 |
Target: 5'- aCAGggGCGCCgCCUCGaagacgGGCcucuggGaGUCCa -3' miRNA: 3'- -GUCuuUGUGGgGGAGU------UCGua----C-CAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 122183 | 0.68 | 0.961485 |
Target: 5'- -uGAccCGCCCCCgc-AGCAUGGccUCCa -3' miRNA: 3'- guCUuuGUGGGGGaguUCGUACC--AGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 47805 | 0.68 | 0.961485 |
Target: 5'- uUAGGAACugCaCCCUgCGGGCAgacagGG-CCg -3' miRNA: 3'- -GUCUUUGugG-GGGA-GUUCGUa----CCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 122905 | 0.68 | 0.961485 |
Target: 5'- gGGAGGCcaccucccuguACCgCCUCAGGCAgcccaggagGGUCUc -3' miRNA: 3'- gUCUUUG-----------UGGgGGAGUUCGUa--------CCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 15116 | 0.68 | 0.961485 |
Target: 5'- aCAucAGCACCCCCgUUggGcCGUGG-CCu -3' miRNA: 3'- -GUcuUUGUGGGGG-AGuuC-GUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 122282 | 0.68 | 0.961485 |
Target: 5'- aCAGGucccugcACGCCCCCgcggcgcgCGAGCAgcUGG-CCg -3' miRNA: 3'- -GUCUu------UGUGGGGGa-------GUUCGU--ACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 83098 | 0.68 | 0.96491 |
Target: 5'- aCAGGGcuAUAUCCCCcagcucCAGGCAccuccUGGUCCc -3' miRNA: 3'- -GUCUU--UGUGGGGGa-----GUUCGU-----ACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 29579 | 0.68 | 0.96491 |
Target: 5'- -----cCGCCCCCUggacgcugcgccUGAGCAggUGGUCCg -3' miRNA: 3'- gucuuuGUGGGGGA------------GUUCGU--ACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 138667 | 0.68 | 0.96491 |
Target: 5'- cCAGcAugGCCCCUgucugCcAGCAUGGcCCc -3' miRNA: 3'- -GUCuUugUGGGGGa----GuUCGUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 136359 | 0.68 | 0.96491 |
Target: 5'- gGGggGCGCCUUCagGcGCAUGG-CCa -3' miRNA: 3'- gUCuuUGUGGGGGagUuCGUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 138742 | 0.68 | 0.96491 |
Target: 5'- cCAGcAugGCCCCUgucugCcAGCAUGGcCCc -3' miRNA: 3'- -GUCuUugUGGGGGa----GuUCGUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 76663 | 0.68 | 0.966219 |
Target: 5'- cCAGGAuguacaugggccacuGCACCCCCguggccuugUC-GGCGUGGUgCa -3' miRNA: 3'- -GUCUU---------------UGUGGGGG---------AGuUCGUACCAgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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