miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 3' -52.5 NC_001650.1 + 61389 0.66 0.984789
Target:  5'- uCAGggGCACCCUCUCucuugGGGCAacagcgauagucaUGGg-- -3'
miRNA:   3'- -GUCuuUGUGGGGGAG-----UUCGU-------------ACCagg -5'
3650 3' -52.5 NC_001650.1 + 166978 0.66 0.9833
Target:  5'- uCAGAgcacguaccugcacAGCGCCCCCUgCcggccgAGGCGauagcgcucuccuauUGGUCCg -3'
miRNA:   3'- -GUCU--------------UUGUGGGGGA-G------UUCGU---------------ACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 271 0.66 0.9833
Target:  5'- uCAGAgcacguaccugcacAGCGCCCCCUgCcggccgAGGCGauagcgcucuccuauUGGUCCg -3'
miRNA:   3'- -GUCU--------------UUGUGGGGGA-G------UUCGU---------------ACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 36030 0.66 0.983107
Target:  5'- gGGGGAgGCgCCCagGAGCGUGcUCCu -3'
miRNA:   3'- gUCUUUgUGgGGGagUUCGUACcAGG- -5'
3650 3' -52.5 NC_001650.1 + 60962 0.66 0.983107
Target:  5'- gGGGAACACgCgCCUCu-GCAUGGcgCUg -3'
miRNA:   3'- gUCUUUGUGgG-GGAGuuCGUACCa-GG- -5'
3650 3' -52.5 NC_001650.1 + 175086 0.66 0.983107
Target:  5'- uCAGGAcccCugCCCCUCAuAGCcauUGG-CCa -3'
miRNA:   3'- -GUCUUu--GugGGGGAGU-UCGu--ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 24070 0.66 0.983107
Target:  5'- aCAGGAugaccgagcGCGCCuCCUUCAGGUcgGGggugagcuUCCa -3'
miRNA:   3'- -GUCUU---------UGUGG-GGGAGUUCGuaCC--------AGG- -5'
3650 3' -52.5 NC_001650.1 + 124172 0.66 0.983107
Target:  5'- aCAGGAACGCCCCCguguacucCAccccCGUGGgccCCa -3'
miRNA:   3'- -GUCUUUGUGGGGGa-------GUuc--GUACCa--GG- -5'
3650 3' -52.5 NC_001650.1 + 8379 0.66 0.983107
Target:  5'- uCAGGAcccCugCCCCUCAuAGCcauUGG-CCa -3'
miRNA:   3'- -GUCUUu--GugGGGGAGU-UCGu--ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 96055 0.66 0.983107
Target:  5'- uCGGcAGCGCCCCC---GGCAcGcGUCCg -3'
miRNA:   3'- -GUCuUUGUGGGGGaguUCGUaC-CAGG- -5'
3650 3' -52.5 NC_001650.1 + 86179 0.66 0.983107
Target:  5'- ------gGCCCCCgaugcuacacUCGAGCG-GGUCCg -3'
miRNA:   3'- gucuuugUGGGGG----------AGUUCGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 118904 0.67 0.981077
Target:  5'- aCAGGAaccuguGCACCCCCUUcuccAGCuu-GUCCc -3'
miRNA:   3'- -GUCUU------UGUGGGGGAGu---UCGuacCAGG- -5'
3650 3' -52.5 NC_001650.1 + 55090 0.67 0.981077
Target:  5'- uCAGAAucccACGCCCCCUaaaAAGCcaGGUaCUa -3'
miRNA:   3'- -GUCUU----UGUGGGGGAg--UUCGuaCCA-GG- -5'
3650 3' -52.5 NC_001650.1 + 42756 0.67 0.981077
Target:  5'- gCAGAu-CACUaCCUCGGGUGUgacGGUCCg -3'
miRNA:   3'- -GUCUuuGUGGgGGAGUUCGUA---CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 142667 0.67 0.97887
Target:  5'- -uGAAGCACCUCUUUAugagaaagugcAGCugcaGGUCCa -3'
miRNA:   3'- guCUUUGUGGGGGAGU-----------UCGua--CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 110499 0.67 0.976478
Target:  5'- aAGAGGCcggACCCCC-CGAGCAauGUCa -3'
miRNA:   3'- gUCUUUG---UGGGGGaGUUCGUacCAGg -5'
3650 3' -52.5 NC_001650.1 + 135978 0.67 0.976478
Target:  5'- uCAGAGcaugGCGgCCUC-CAGGUacGUGGUCCu -3'
miRNA:   3'- -GUCUU----UGUgGGGGaGUUCG--UACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 158350 0.67 0.976478
Target:  5'- aAGgcGC-CCCCCUCGgcGGCcggGGUCa -3'
miRNA:   3'- gUCuuUGuGGGGGAGU--UCGua-CCAGg -5'
3650 3' -52.5 NC_001650.1 + 133207 0.67 0.973893
Target:  5'- -uGAGcccGCGCCCCCUCccAGCGU-GUCUc -3'
miRNA:   3'- guCUU---UGUGGGGGAGu-UCGUAcCAGG- -5'
3650 3' -52.5 NC_001650.1 + 177433 0.67 0.973893
Target:  5'- ----cGCGCgCCCCUCAAG-AUGG-CCg -3'
miRNA:   3'- gucuuUGUG-GGGGAGUUCgUACCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.