miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 3' -52.5 NC_001650.1 + 88735 0.67 0.973893
Target:  5'- uCGGGGAaGCCCCCggccggCAAGCggGGcaggCCg -3'
miRNA:   3'- -GUCUUUgUGGGGGa-----GUUCGuaCCa---GG- -5'
3650 3' -52.5 NC_001650.1 + 66311 0.67 0.973893
Target:  5'- aAGGGACGCCCCCaaagaUCA-GCucGGUCa -3'
miRNA:   3'- gUCUUUGUGGGGG-----AGUuCGuaCCAGg -5'
3650 3' -52.5 NC_001650.1 + 32036 0.67 0.973893
Target:  5'- aGGGGACugcCCCCCUgGuGC-UGGUCUu -3'
miRNA:   3'- gUCUUUGu--GGGGGAgUuCGuACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 170784 0.67 0.973893
Target:  5'- uGGAGAgGCCCUgcCAGGCAUGGg-- -3'
miRNA:   3'- gUCUUUgUGGGGgaGUUCGUACCagg -5'
3650 3' -52.5 NC_001650.1 + 133207 0.67 0.973893
Target:  5'- -uGAGcccGCGCCCCCUCccAGCGU-GUCUc -3'
miRNA:   3'- guCUU---UGUGGGGGAGu-UCGUAcCAGG- -5'
3650 3' -52.5 NC_001650.1 + 177433 0.67 0.973893
Target:  5'- ----cGCGCgCCCCUCAAG-AUGG-CCg -3'
miRNA:   3'- gucuuUGUG-GGGGAGUUCgUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 4077 0.67 0.973893
Target:  5'- uGGAGAgGCCCUgcCAGGCAUGGg-- -3'
miRNA:   3'- gUCUUUgUGGGGgaGUUCGUACCagg -5'
3650 3' -52.5 NC_001650.1 + 120503 0.67 0.971108
Target:  5'- gAGGGugGCCUCCUUcgggGAGCA-GGUgCCu -3'
miRNA:   3'- gUCUUugUGGGGGAG----UUCGUaCCA-GG- -5'
3650 3' -52.5 NC_001650.1 + 134353 0.67 0.971108
Target:  5'- gCGGu--CGCCCCCUUggucuGGUcgGGUCUc -3'
miRNA:   3'- -GUCuuuGUGGGGGAGu----UCGuaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 115395 0.67 0.971108
Target:  5'- cCAGGAuC-CCCCCgucgCAGGCcGUGG-CCa -3'
miRNA:   3'- -GUCUUuGuGGGGGa---GUUCG-UACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 89739 0.67 0.971108
Target:  5'- gGGAGAcCACCCCC-CGccuuGCGUGGggCUg -3'
miRNA:   3'- gUCUUU-GUGGGGGaGUu---CGUACCa-GG- -5'
3650 3' -52.5 NC_001650.1 + 47520 0.68 0.968116
Target:  5'- gGGGGAC-CCCCCU-GAGCuaucccugGGUCUa -3'
miRNA:   3'- gUCUUUGuGGGGGAgUUCGua------CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 129386 0.68 0.968116
Target:  5'- aCGGAGGC-CCCCaUCAacAGCAUGGa-- -3'
miRNA:   3'- -GUCUUUGuGGGGgAGU--UCGUACCagg -5'
3650 3' -52.5 NC_001650.1 + 156310 0.68 0.968116
Target:  5'- uGGAggUGCCCCUgggCAaccuGGCcggGGUCCu -3'
miRNA:   3'- gUCUuuGUGGGGGa--GU----UCGua-CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 32213 0.68 0.967177
Target:  5'- uCAGguACACCCCCUCcccuagcucaccagAGGCGgacUCCg -3'
miRNA:   3'- -GUCuuUGUGGGGGAG--------------UUCGUaccAGG- -5'
3650 3' -52.5 NC_001650.1 + 76663 0.68 0.966219
Target:  5'- cCAGGAuguacaugggccacuGCACCCCCguggccuugUC-GGCGUGGUgCa -3'
miRNA:   3'- -GUCUU---------------UGUGGGGG---------AGuUCGUACCAgG- -5'
3650 3' -52.5 NC_001650.1 + 83098 0.68 0.96491
Target:  5'- aCAGGGcuAUAUCCCCcagcucCAGGCAccuccUGGUCCc -3'
miRNA:   3'- -GUCUU--UGUGGGGGa-----GUUCGU-----ACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 136359 0.68 0.96491
Target:  5'- gGGggGCGCCUUCagGcGCAUGG-CCa -3'
miRNA:   3'- gUCuuUGUGGGGGagUuCGUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 29579 0.68 0.96491
Target:  5'- -----cCGCCCCCUggacgcugcgccUGAGCAggUGGUCCg -3'
miRNA:   3'- gucuuuGUGGGGGA------------GUUCGU--ACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 138742 0.68 0.96491
Target:  5'- cCAGcAugGCCCCUgucugCcAGCAUGGcCCc -3'
miRNA:   3'- -GUCuUugUGGGGGa----GuUCGUACCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.