miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 3' -52.5 NC_001650.1 + 138742 0.68 0.96491
Target:  5'- cCAGcAugGCCCCUgucugCcAGCAUGGcCCc -3'
miRNA:   3'- -GUCuUugUGGGGGa----GuUCGUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 122905 0.68 0.961485
Target:  5'- gGGAGGCcaccucccuguACCgCCUCAGGCAgcccaggagGGUCUc -3'
miRNA:   3'- gUCUUUG-----------UGGgGGAGUUCGUa--------CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 122183 0.68 0.961485
Target:  5'- -uGAccCGCCCCCgc-AGCAUGGccUCCa -3'
miRNA:   3'- guCUuuGUGGGGGaguUCGUACC--AGG- -5'
3650 3' -52.5 NC_001650.1 + 122282 0.68 0.961485
Target:  5'- aCAGGucccugcACGCCCCCgcggcgcgCGAGCAgcUGG-CCg -3'
miRNA:   3'- -GUCUu------UGUGGGGGa-------GUUCGU--ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 181823 0.68 0.961485
Target:  5'- aCAucAGCACCCCCgUUggGcCGUGG-CCu -3'
miRNA:   3'- -GUcuUUGUGGGGG-AGuuC-GUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 47805 0.68 0.961485
Target:  5'- uUAGGAACugCaCCCUgCGGGCAgacagGG-CCg -3'
miRNA:   3'- -GUCUUUGugG-GGGA-GUUCGUa----CCaGG- -5'
3650 3' -52.5 NC_001650.1 + 131188 0.68 0.961485
Target:  5'- aCAGggGCGCCgCCUCGaagacgGGCcucuggGaGUCCa -3'
miRNA:   3'- -GUCuuUGUGGgGGAGU------UCGua----C-CAGG- -5'
3650 3' -52.5 NC_001650.1 + 15116 0.68 0.961485
Target:  5'- aCAucAGCACCCCCgUUggGcCGUGG-CCu -3'
miRNA:   3'- -GUcuUUGUGGGGG-AGuuC-GUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 46489 0.68 0.961485
Target:  5'- uCAGAAGuuCACCCUCUCcccGGCGUcGGggCCg -3'
miRNA:   3'- -GUCUUU--GUGGGGGAGu--UCGUA-CCa-GG- -5'
3650 3' -52.5 NC_001650.1 + 73586 0.68 0.957835
Target:  5'- cCAGggGCAgggCCUCGuGCGUGGUCUc -3'
miRNA:   3'- -GUCuuUGUgggGGAGUuCGUACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 117476 0.68 0.957835
Target:  5'- -cGGAGCGCCCCCcaccgUCAccAGC-UGGUUa -3'
miRNA:   3'- guCUUUGUGGGGG-----AGU--UCGuACCAGg -5'
3650 3' -52.5 NC_001650.1 + 95212 0.68 0.957835
Target:  5'- uCAGGGACAUgCCCUgGgccuuGGCuAUGGUCa -3'
miRNA:   3'- -GUCUUUGUGgGGGAgU-----UCG-UACCAGg -5'
3650 3' -52.5 NC_001650.1 + 157490 0.68 0.957835
Target:  5'- gGGAggUGCCCCCagGcGCAUGGgCUa -3'
miRNA:   3'- gUCUuuGUGGGGGagUuCGUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 132938 0.68 0.957835
Target:  5'- -cGAGGguCCCCCcgcggcgCGAGCccuccgGUGGUCCg -3'
miRNA:   3'- guCUUUguGGGGGa------GUUCG------UACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 143265 0.68 0.953954
Target:  5'- -cGGAGCGCCucggcgCCCUCc-GCGUGGcCCg -3'
miRNA:   3'- guCUUUGUGG------GGGAGuuCGUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 73746 0.68 0.953954
Target:  5'- ---cAACGCCUCCUaCAAGCAgaugaUGGcUCCg -3'
miRNA:   3'- gucuUUGUGGGGGA-GUUCGU-----ACC-AGG- -5'
3650 3' -52.5 NC_001650.1 + 58748 0.68 0.94984
Target:  5'- gGGcGACACCCCCaUCuuccAGCAcgUGGcCCu -3'
miRNA:   3'- gUCuUUGUGGGGG-AGu---UCGU--ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 109280 0.69 0.945488
Target:  5'- gGGggGCGCCCCgCUCGucGCccUGG-CCa -3'
miRNA:   3'- gUCuuUGUGGGG-GAGUu-CGu-ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 797 0.69 0.945488
Target:  5'- cCGGccuCGCCCCCUCAuuuGCAU-GUCUc -3'
miRNA:   3'- -GUCuuuGUGGGGGAGUu--CGUAcCAGG- -5'
3650 3' -52.5 NC_001650.1 + 167503 0.69 0.945488
Target:  5'- cCGGccuCGCCCCCUCAuuuGCAU-GUCUc -3'
miRNA:   3'- -GUCuuuGUGGGGGAGUu--CGUAcCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.