miRNA display CGI


Results 1 - 20 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 3' -52.5 NC_001650.1 + 271 0.66 0.9833
Target:  5'- uCAGAgcacguaccugcacAGCGCCCCCUgCcggccgAGGCGauagcgcucuccuauUGGUCCg -3'
miRNA:   3'- -GUCU--------------UUGUGGGGGA-G------UUCGU---------------ACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 797 0.69 0.945488
Target:  5'- cCGGccuCGCCCCCUCAuuuGCAU-GUCUc -3'
miRNA:   3'- -GUCuuuGUGGGGGAGUu--CGUAcCAGG- -5'
3650 3' -52.5 NC_001650.1 + 3474 0.69 0.940895
Target:  5'- uGGGAGCAgCCUgcCAGGCAUGGggaUCCa -3'
miRNA:   3'- gUCUUUGUgGGGgaGUUCGUACC---AGG- -5'
3650 3' -52.5 NC_001650.1 + 4077 0.67 0.973893
Target:  5'- uGGAGAgGCCCUgcCAGGCAUGGg-- -3'
miRNA:   3'- gUCUUUgUGGGGgaGUUCGUACCagg -5'
3650 3' -52.5 NC_001650.1 + 5001 0.69 0.925652
Target:  5'- cCGGAGGCcuaCCCCUCGAGCcccGG-CCu -3'
miRNA:   3'- -GUCUUUGug-GGGGAGUUCGua-CCaGG- -5'
3650 3' -52.5 NC_001650.1 + 6147 0.69 0.925652
Target:  5'- gGGGGACugCCCaCUCAAcccCAUGG-CCa -3'
miRNA:   3'- gUCUUUGugGGG-GAGUUc--GUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 6536 0.66 0.988217
Target:  5'- aAGggGCACugCCCaCUCAAcccCAUGGcCCa -3'
miRNA:   3'- gUCuuUGUG--GGG-GAGUUc--GUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 6747 0.71 0.874334
Target:  5'- gCAGuGAGCACCCCCUagucugccuGGCAacccaGGUCCc -3'
miRNA:   3'- -GUC-UUUGUGGGGGAgu-------UCGUa----CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 8379 0.66 0.983107
Target:  5'- uCAGGAcccCugCCCCUCAuAGCcauUGG-CCa -3'
miRNA:   3'- -GUCUUu--GugGGGGAGU-UCGu--ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 10726 0.67 0.973893
Target:  5'- ----cGCGCgCCCCUCAAG-AUGG-CCg -3'
miRNA:   3'- gucuuUGUG-GGGGAGUUCgUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 15116 0.68 0.961485
Target:  5'- aCAucAGCACCCCCgUUggGcCGUGG-CCu -3'
miRNA:   3'- -GUcuUUGUGGGGG-AGuuC-GUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 16425 0.66 0.986505
Target:  5'- aGGGAGgACCaaCCCUCAGGCcaucuuaAUGG-CCu -3'
miRNA:   3'- gUCUUUgUGG--GGGAGUUCG-------UACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 23040 0.75 0.668075
Target:  5'- uCAGAGAcCGCCUCCUCGGGCAggaggcugguguaGGUCUu -3'
miRNA:   3'- -GUCUUU-GUGGGGGAGUUCGUa------------CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 23846 0.67 0.973893
Target:  5'- ----uGCGCCCCCUUGAG-GUGGggCCa -3'
miRNA:   3'- gucuuUGUGGGGGAGUUCgUACCa-GG- -5'
3650 3' -52.5 NC_001650.1 + 23986 0.73 0.762498
Target:  5'- aGGAcuugaugucAGCGcCCCCCUCGGGCG-GGUCUc -3'
miRNA:   3'- gUCU---------UUGU-GGGGGAGUUCGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 24070 0.66 0.983107
Target:  5'- aCAGGAugaccgagcGCGCCuCCUUCAGGUcgGGggugagcuUCCa -3'
miRNA:   3'- -GUCUU---------UGUGG-GGGAGUUCGuaCC--------AGG- -5'
3650 3' -52.5 NC_001650.1 + 24748 0.72 0.826449
Target:  5'- cCAGGAaggACACCUUCUCccuGGGCGUGGgcUCCa -3'
miRNA:   3'- -GUCUU---UGUGGGGGAG---UUCGUACC--AGG- -5'
3650 3' -52.5 NC_001650.1 + 26285 0.66 0.989622
Target:  5'- gGGAAACcuCUCCCUCAGGCcgGcGcUCa -3'
miRNA:   3'- gUCUUUGu-GGGGGAGUUCGuaC-C-AGg -5'
3650 3' -52.5 NC_001650.1 + 26808 0.72 0.826449
Target:  5'- gGGAGccgcGCGCCCCUUCGAGU-UGG-CCg -3'
miRNA:   3'- gUCUU----UGUGGGGGAGUUCGuACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 26950 0.69 0.936059
Target:  5'- uGGAGGCggcgcacaGCCCCUcCAGGCcgGGcCCg -3'
miRNA:   3'- gUCUUUG--------UGGGGGaGUUCGuaCCaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.