miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 3' -52.5 NC_001650.1 + 50235 0.7 0.920081
Target:  5'- ------aGCCCCCUCAGGCccGGgCCu -3'
miRNA:   3'- gucuuugUGGGGGAGUUCGuaCCaGG- -5'
3650 3' -52.5 NC_001650.1 + 50457 0.86 0.205417
Target:  5'- gAGAGGCGCCCCUgUCGcGCAUGGUCCc -3'
miRNA:   3'- gUCUUUGUGGGGG-AGUuCGUACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 50637 0.72 0.826449
Target:  5'- -uGAuGCGCCCCCUCGAGgGgccGGUgCCc -3'
miRNA:   3'- guCUuUGUGGGGGAGUUCgUa--CCA-GG- -5'
3650 3' -52.5 NC_001650.1 + 55040 0.7 0.914264
Target:  5'- gCAGAAcccagUACCCgCgCGAGCcgGGUCCa -3'
miRNA:   3'- -GUCUUu----GUGGGgGaGUUCGuaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 55090 0.67 0.981077
Target:  5'- uCAGAAucccACGCCCCCUaaaAAGCcaGGUaCUa -3'
miRNA:   3'- -GUCUU----UGUGGGGGAg--UUCGuaCCA-GG- -5'
3650 3' -52.5 NC_001650.1 + 58748 0.68 0.94984
Target:  5'- gGGcGACACCCCCaUCuuccAGCAcgUGGcCCu -3'
miRNA:   3'- gUCuUUGUGGGGG-AGu---UCGU--ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 60841 0.7 0.895359
Target:  5'- uGGAGACGguggcCCCCCUCAaccGGCAgGGcgCCu -3'
miRNA:   3'- gUCUUUGU-----GGGGGAGU---UCGUaCCa-GG- -5'
3650 3' -52.5 NC_001650.1 + 60962 0.66 0.983107
Target:  5'- gGGGAACACgCgCCUCu-GCAUGGcgCUg -3'
miRNA:   3'- gUCUUUGUGgG-GGAGuuCGUACCa-GG- -5'
3650 3' -52.5 NC_001650.1 + 61389 0.66 0.984789
Target:  5'- uCAGggGCACCCUCUCucuugGGGCAacagcgauagucaUGGg-- -3'
miRNA:   3'- -GUCuuUGUGGGGGAG-----UUCGU-------------ACCagg -5'
3650 3' -52.5 NC_001650.1 + 61718 0.66 0.986668
Target:  5'- aAGGuacACGCCCCCgaugCAGGCGgccaggaaaagaUGG-CCg -3'
miRNA:   3'- gUCUu--UGUGGGGGa---GUUCGU------------ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 62297 0.72 0.843216
Target:  5'- gAGAAaccgGCACCgCCCUCAGcCAUGG-CCu -3'
miRNA:   3'- gUCUU----UGUGG-GGGAGUUcGUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 66311 0.67 0.973893
Target:  5'- aAGGGACGCCCCCaaagaUCA-GCucGGUCa -3'
miRNA:   3'- gUCUUUGUGGGGG-----AGUuCGuaCCAGg -5'
3650 3' -52.5 NC_001650.1 + 68709 0.69 0.940895
Target:  5'- aAG-AGCGCCCCCUCGcggagacccagcGGCAcgucauggUGGcCCg -3'
miRNA:   3'- gUCuUUGUGGGGGAGU------------UCGU--------ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 68848 0.66 0.989622
Target:  5'- cCGGuGAGCAgCCUCUCGGuGCAcgGGUUCg -3'
miRNA:   3'- -GUC-UUUGUgGGGGAGUU-CGUa-CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 69028 0.72 0.851309
Target:  5'- -cGAGGCGCcccgCCCCUCGAGCGaGGgccCCg -3'
miRNA:   3'- guCUUUGUG----GGGGAGUUCGUaCCa--GG- -5'
3650 3' -52.5 NC_001650.1 + 69925 0.69 0.940895
Target:  5'- cCGGAGACugCUCCUCGgGGCcugcUGGUaCCc -3'
miRNA:   3'- -GUCUUUGugGGGGAGU-UCGu---ACCA-GG- -5'
3650 3' -52.5 NC_001650.1 + 73586 0.68 0.957835
Target:  5'- cCAGggGCAgggCCUCGuGCGUGGUCUc -3'
miRNA:   3'- -GUCuuUGUgggGGAGUuCGUACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 73746 0.68 0.953954
Target:  5'- ---cAACGCCUCCUaCAAGCAgaugaUGGcUCCg -3'
miRNA:   3'- gucuUUGUGGGGGA-GUUCGU-----ACC-AGG- -5'
3650 3' -52.5 NC_001650.1 + 75673 0.66 0.989622
Target:  5'- ------gGCCCCCUgGcAGUGUGGUCUu -3'
miRNA:   3'- gucuuugUGGGGGAgU-UCGUACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 76663 0.68 0.966219
Target:  5'- cCAGGAuguacaugggccacuGCACCCCCguggccuugUC-GGCGUGGUgCa -3'
miRNA:   3'- -GUCUU---------------UGUGGGGG---------AGuUCGUACCAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.