miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 3' -52.5 NC_001650.1 + 79581 0.69 0.925652
Target:  5'- cCAGAGGCugCCCgUCu-GCGUGGa-- -3'
miRNA:   3'- -GUCUUUGugGGGgAGuuCGUACCagg -5'
3650 3' -52.5 NC_001650.1 + 81513 0.69 0.936059
Target:  5'- gGGAGGCGCUCCagacguUCAAGCAaaaGUCCa -3'
miRNA:   3'- gUCUUUGUGGGGg-----AGUUCGUac-CAGG- -5'
3650 3' -52.5 NC_001650.1 + 83098 0.68 0.96491
Target:  5'- aCAGGGcuAUAUCCCCcagcucCAGGCAccuccUGGUCCc -3'
miRNA:   3'- -GUCUU--UGUGGGGGa-----GUUCGU-----ACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 83319 0.71 0.888582
Target:  5'- cCAGGAugACCCagUCGAGgGaGGUCCu -3'
miRNA:   3'- -GUCUUugUGGGggAGUUCgUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 83545 0.72 0.843216
Target:  5'- -cGggGCGCCCCguUUCAGGC-UGGcCCu -3'
miRNA:   3'- guCuuUGUGGGG--GAGUUCGuACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 86179 0.66 0.983107
Target:  5'- ------gGCCCCCgaugcuacacUCGAGCG-GGUCCg -3'
miRNA:   3'- gucuuugUGGGGG----------AGUUCGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 88735 0.67 0.973893
Target:  5'- uCGGGGAaGCCCCCggccggCAAGCggGGcaggCCg -3'
miRNA:   3'- -GUCUUUgUGGGGGa-----GUUCGuaCCa---GG- -5'
3650 3' -52.5 NC_001650.1 + 89163 0.72 0.826449
Target:  5'- gAGGAGgGCCggcgggaggCCCUCGAagucgcGCGUGGUCCu -3'
miRNA:   3'- gUCUUUgUGG---------GGGAGUU------CGUACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 89204 0.7 0.908204
Target:  5'- gGGAAGCGCgaCCCCUCGcGGCA-GG-CCg -3'
miRNA:   3'- gUCUUUGUG--GGGGAGU-UCGUaCCaGG- -5'
3650 3' -52.5 NC_001650.1 + 89739 0.67 0.971108
Target:  5'- gGGAGAcCACCCCC-CGccuuGCGUGGggCUg -3'
miRNA:   3'- gUCUUU-GUGGGGGaGUu---CGUACCa-GG- -5'
3650 3' -52.5 NC_001650.1 + 94680 0.71 0.859196
Target:  5'- gAGGAGCGCCgCCUCG-GUcUGGUCg -3'
miRNA:   3'- gUCUUUGUGGgGGAGUuCGuACCAGg -5'
3650 3' -52.5 NC_001650.1 + 95212 0.68 0.957835
Target:  5'- uCAGGGACAUgCCCUgGgccuuGGCuAUGGUCa -3'
miRNA:   3'- -GUCUUUGUGgGGGAgU-----UCG-UACCAGg -5'
3650 3' -52.5 NC_001650.1 + 96055 0.66 0.983107
Target:  5'- uCGGcAGCGCCCCC---GGCAcGcGUCCg -3'
miRNA:   3'- -GUCuUUGUGGGGGaguUCGUaC-CAGG- -5'
3650 3' -52.5 NC_001650.1 + 97833 0.69 0.925652
Target:  5'- cCAGAAGCAUCgCCCUCGc-CcgGGUCa -3'
miRNA:   3'- -GUCUUUGUGG-GGGAGUucGuaCCAGg -5'
3650 3' -52.5 NC_001650.1 + 102195 0.7 0.895359
Target:  5'- cCAGAGACACCCCCaggcgcacucCAGGCAguucuuucaGGgagCCg -3'
miRNA:   3'- -GUCUUUGUGGGGGa---------GUUCGUa--------CCa--GG- -5'
3650 3' -52.5 NC_001650.1 + 107226 0.73 0.790804
Target:  5'- gAGAAGCuggccGCCgCCCUCAAGauggacgGGUCCa -3'
miRNA:   3'- gUCUUUG-----UGG-GGGAGUUCgua----CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 109280 0.69 0.945488
Target:  5'- gGGggGCGCCCCgCUCGucGCccUGG-CCa -3'
miRNA:   3'- gUCuuUGUGGGG-GAGUu-CGu-ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 110499 0.67 0.976478
Target:  5'- aAGAGGCcggACCCCC-CGAGCAauGUCa -3'
miRNA:   3'- gUCUUUG---UGGGGGaGUUCGUacCAGg -5'
3650 3' -52.5 NC_001650.1 + 110654 0.71 0.869884
Target:  5'- gGGGAcccguccccgcgcacGCGCCCCCUCGGGCGaugccGGaCCg -3'
miRNA:   3'- gUCUU---------------UGUGGGGGAGUUCGUa----CCaGG- -5'
3650 3' -52.5 NC_001650.1 + 111135 0.66 0.986668
Target:  5'- aGGGGACgcgcaaccccggGCCCUCUCAgggagggugugaGGCG-GGUCCc -3'
miRNA:   3'- gUCUUUG------------UGGGGGAGU------------UCGUaCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.