Results 101 - 120 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3650 | 3' | -52.5 | NC_001650.1 | + | 132938 | 0.68 | 0.957835 |
Target: 5'- -cGAGGguCCCCCcgcggcgCGAGCccuccgGUGGUCCg -3' miRNA: 3'- guCUUUguGGGGGa------GUUCG------UACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 133207 | 0.67 | 0.973893 |
Target: 5'- -uGAGcccGCGCCCCCUCccAGCGU-GUCUc -3' miRNA: 3'- guCUU---UGUGGGGGAGu-UCGUAcCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 133929 | 0.69 | 0.936059 |
Target: 5'- uGGggGCGCCCCC-CAgaccccGGCAggcGG-CCg -3' miRNA: 3'- gUCuuUGUGGGGGaGU------UCGUa--CCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 134126 | 0.7 | 0.895359 |
Target: 5'- gGGggGCGCCCCCagcuguacUCuGGGCGccgcGGUCCc -3' miRNA: 3'- gUCuuUGUGGGGG--------AG-UUCGUa---CCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 134353 | 0.67 | 0.971108 |
Target: 5'- gCGGu--CGCCCCCUUggucuGGUcgGGUCUc -3' miRNA: 3'- -GUCuuuGUGGGGGAGu----UCGuaCCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 134957 | 0.73 | 0.762498 |
Target: 5'- aGGggGCGCCgCCUCcacAGCAgcaucuggggGGUCCg -3' miRNA: 3'- gUCuuUGUGGgGGAGu--UCGUa---------CCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 135978 | 0.67 | 0.976478 |
Target: 5'- uCAGAGcaugGCGgCCUC-CAGGUacGUGGUCCu -3' miRNA: 3'- -GUCUU----UGUgGGGGaGUUCG--UACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 136359 | 0.68 | 0.96491 |
Target: 5'- gGGggGCGCCUUCagGcGCAUGG-CCa -3' miRNA: 3'- gUCuuUGUGGGGGagUuCGUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 137017 | 0.72 | 0.826449 |
Target: 5'- gAGAGGCACCUCC-CAAacugggaguGCA-GGUCCa -3' miRNA: 3'- gUCUUUGUGGGGGaGUU---------CGUaCCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 138667 | 0.68 | 0.96491 |
Target: 5'- cCAGcAugGCCCCUgucugCcAGCAUGGcCCc -3' miRNA: 3'- -GUCuUugUGGGGGa----GuUCGUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 138705 | 0.69 | 0.925652 |
Target: 5'- cCAGcAugGCCCCuguCUCcAGCAUGGcCCc -3' miRNA: 3'- -GUCuUugUGGGG---GAGuUCGUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 138742 | 0.68 | 0.96491 |
Target: 5'- cCAGcAugGCCCCUgucugCcAGCAUGGcCCc -3' miRNA: 3'- -GUCuUugUGGGGGa----GuUCGUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 142134 | 0.7 | 0.908204 |
Target: 5'- -uGGAGCACUCCUUCcAGCcgGGgagCCc -3' miRNA: 3'- guCUUUGUGGGGGAGuUCGuaCCa--GG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 142667 | 0.67 | 0.97887 |
Target: 5'- -uGAAGCACCUCUUUAugagaaagugcAGCugcaGGUCCa -3' miRNA: 3'- guCUUUGUGGGGGAGU-----------UCGua--CCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 142966 | 0.66 | 0.984968 |
Target: 5'- gGGAAACGCCCuggagaccgCCUCcgcaaacuccGGGCGccUGGUCUc -3' miRNA: 3'- gUCUUUGUGGG---------GGAG----------UUCGU--ACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 143265 | 0.68 | 0.953954 |
Target: 5'- -cGGAGCGCCucggcgCCCUCc-GCGUGGcCCg -3' miRNA: 3'- guCUUUGUGG------GGGAGuuCGUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 147213 | 0.66 | 0.984968 |
Target: 5'- cCAGAAugccucucGCGCgCCCUCugau-UGGUCCa -3' miRNA: 3'- -GUCUU--------UGUGgGGGAGuucguACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 156310 | 0.68 | 0.968116 |
Target: 5'- uGGAggUGCCCCUgggCAaccuGGCcggGGUCCu -3' miRNA: 3'- gUCUuuGUGGGGGa--GU----UCGua-CCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 157335 | 0.66 | 0.989622 |
Target: 5'- -cGAAguGCAgCCCCUCcugaucGCA-GGUCCu -3' miRNA: 3'- guCUU--UGUgGGGGAGuu----CGUaCCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 157490 | 0.68 | 0.957835 |
Target: 5'- gGGAggUGCCCCCagGcGCAUGGgCUa -3' miRNA: 3'- gUCUuuGUGGGGGagUuCGUACCaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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