miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 3' -52.5 NC_001650.1 + 183132 0.66 0.986505
Target:  5'- aGGGAGgACCaaCCCUCAGGCcaucuuaAUGG-CCu -3'
miRNA:   3'- gUCUUUgUGG--GGGAGUUCG-------UACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 181823 0.68 0.961485
Target:  5'- aCAucAGCACCCCCgUUggGcCGUGG-CCu -3'
miRNA:   3'- -GUcuUUGUGGGGG-AGuuC-GUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 180626 0.7 0.914264
Target:  5'- gAGAGGCGCCCCCUgGAcccCcgGGaCCa -3'
miRNA:   3'- gUCUUUGUGGGGGAgUUc--GuaCCaGG- -5'
3650 3' -52.5 NC_001650.1 + 177433 0.67 0.973893
Target:  5'- ----cGCGCgCCCCUCAAG-AUGG-CCg -3'
miRNA:   3'- gucuuUGUG-GGGGAGUUCgUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 175086 0.66 0.983107
Target:  5'- uCAGGAcccCugCCCCUCAuAGCcauUGG-CCa -3'
miRNA:   3'- -GUCUUu--GugGGGGAGU-UCGu--ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 173454 0.71 0.874334
Target:  5'- gCAGuGAGCACCCCCUagucugccuGGCAacccaGGUCCc -3'
miRNA:   3'- -GUC-UUUGUGGGGGAgu-------UCGUa----CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 173243 0.66 0.988217
Target:  5'- aAGggGCACugCCCaCUCAAcccCAUGGcCCa -3'
miRNA:   3'- gUCuuUGUG--GGG-GAGUUc--GUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 172854 0.69 0.925652
Target:  5'- gGGGGACugCCCaCUCAAcccCAUGG-CCa -3'
miRNA:   3'- gUCUUUGugGGG-GAGUUc--GUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 171708 0.69 0.925652
Target:  5'- cCGGAGGCcuaCCCCUCGAGCcccGG-CCu -3'
miRNA:   3'- -GUCUUUGug-GGGGAGUUCGua-CCaGG- -5'
3650 3' -52.5 NC_001650.1 + 170784 0.67 0.973893
Target:  5'- uGGAGAgGCCCUgcCAGGCAUGGg-- -3'
miRNA:   3'- gUCUUUgUGGGGgaGUUCGUACCagg -5'
3650 3' -52.5 NC_001650.1 + 170181 0.69 0.940895
Target:  5'- uGGGAGCAgCCUgcCAGGCAUGGggaUCCa -3'
miRNA:   3'- gUCUUUGUgGGGgaGUUCGUACC---AGG- -5'
3650 3' -52.5 NC_001650.1 + 167503 0.69 0.945488
Target:  5'- cCGGccuCGCCCCCUCAuuuGCAU-GUCUc -3'
miRNA:   3'- -GUCuuuGUGGGGGAGUu--CGUAcCAGG- -5'
3650 3' -52.5 NC_001650.1 + 166978 0.66 0.9833
Target:  5'- uCAGAgcacguaccugcacAGCGCCCCCUgCcggccgAGGCGauagcgcucuccuauUGGUCCg -3'
miRNA:   3'- -GUCU--------------UUGUGGGGGA-G------UUCGU---------------ACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 158630 0.7 0.895359
Target:  5'- uCAGGGACcuguccCCCCCUCccuccAGGCGgcuacgggGGUCCa -3'
miRNA:   3'- -GUCUUUGu-----GGGGGAG-----UUCGUa-------CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 158350 0.67 0.976478
Target:  5'- aAGgcGC-CCCCCUCGgcGGCcggGGUCa -3'
miRNA:   3'- gUCuuUGuGGGGGAGU--UCGua-CCAGg -5'
3650 3' -52.5 NC_001650.1 + 157490 0.68 0.957835
Target:  5'- gGGAggUGCCCCCagGcGCAUGGgCUa -3'
miRNA:   3'- gUCUuuGUGGGGGagUuCGUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 157335 0.66 0.989622
Target:  5'- -cGAAguGCAgCCCCUCcugaucGCA-GGUCCu -3'
miRNA:   3'- guCUU--UGUgGGGGAGuu----CGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 156310 0.68 0.968116
Target:  5'- uGGAggUGCCCCUgggCAaccuGGCcggGGUCCu -3'
miRNA:   3'- gUCUuuGUGGGGGa--GU----UCGua-CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 147213 0.66 0.984968
Target:  5'- cCAGAAugccucucGCGCgCCCUCugau-UGGUCCa -3'
miRNA:   3'- -GUCUU--------UGUGgGGGAGuucguACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 143265 0.68 0.953954
Target:  5'- -cGGAGCGCCucggcgCCCUCc-GCGUGGcCCg -3'
miRNA:   3'- guCUUUGUGG------GGGAGuuCGUACCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.